GCC2021 has ended

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GCC2021

GCC2021 is governed by the VIB Conferences Code of Conduct.

The 2021 Galaxy Community Conference (GCC2021) is virtual and global, accessible in any time zone, on every continent, and in every country. GCC2021 events are held twice, once in the original Ghent time zone (GCC EMEA+APAC), and again 9 hours later (GCC Americas).

⇨⇨⇨ Select your timezone to see events in your local time ⇦⇦⇦

01:00 CEST

Open House! Meeting Hall

09:00 CEST

EMEA-APAC Session 1 Meeting HallAndrew Lonie

09:01 CEST

Welcome Meeting HallFrederik Coppens

09:15 CEST

Enabling widespread use of Vertebrate Genome Project assembly pipeline by integration into Galaxy Meeting HallDelphine Lariviere • Alex Ostrovsky

09:33 CEST

Supporting the COVID-19 Data portal: viral data cleaning from human reads and submission to ENA Meeting HallIgnacio Eguinoa

09:39 CEST

Galaxy as a global platform for the analysis of SARS-CoV-2 sequence variants Meeting HallWolfgang Maier

09:57 CEST

CorGAT: a tool for the functional annotation of SARS-CoV-2 genomes Meeting HallErika Ferrandi

10:03 CEST

Easy access to NCBI data within Galaxy Meeting HallAdam Stine • Nuala O'Leary

10:09 CEST

Q&A Meeting Hall

10:34 CEST

EMEA-APAC Session 2 Meeting HallLucille Delisle

10:35 CEST

Using Galaxy File Source Plugins to Work with Remote Data including Applications Meeting HallJohn Chilton • Luke Sargent

10:53 CEST

Overhaul and pagination in Data-Libraries Meeting HallOleg Zharkov

10:59 CEST

Recent updates to Nebulizer: a command line utility for Galaxy admins Meeting HallPeter Briggs

11:05 CEST

How UseGalaxy.EU is managed - tips and tricks from inside Meeting HallGianmauro Cuccuru

11:23 CEST

HPC back-end runner for massive SARS-CoV-2 samples processing Meeting HallHugo Jiménez Hernández

11:29 CEST

Laniakea - Update 2021 Meeting HallMarco Antonio Tangaro

11:35 CEST

Q&A Meeting Hall

13:39 CEST

EMEA-APAC Session 3 Meeting HallJennifer Harrow

13:40 CEST

A Galaxy-based multi-omic workflow for discovery and validation of candidate neoantigen peptides for immuno-oncology Meeting HallTimothy J. Griffin

13:46 CEST

Enhancing the Whole Workflow Experience from Development through Publication and to Execution Meeting HallJohn Chilton

14:04 CEST

Introducing the Intergalactic Workflow Commission Meeting HallMarius van den Beek

14:22 CEST

Publication of BioCompute Objects (IEEE-2791-2020) created from Galaxy workflow invocations Meeting HallCharles [Hadley] King

14:40 CEST

Developing Pro workflows: lessons learned Meeting HallRandy Guertin

14:46 CEST

The WorkflowHub - a registry for workflows Meeting HallIgnacio Eguinoa

14:52 CEST

Q&A Meeting Hall

18:00 CEST

Americas Session 1 Meeting HallFrederik Coppens

18:01 CEST

Welcome Meeting HallFrederik Coppens

18:15 CEST

Enabling widespread use of Vertebrate Genome Project assembly pipeline by integration into Galaxy Meeting HallDelphine Lariviere • Alex Ostrovsky

18:33 CEST

Supporting the COVID-19 Data portal: viral data cleaning from human reads and submission to ENA Meeting HallIgnacio Eguinoa

18:39 CEST

Galaxy as a global platform for the analysis of SARS-CoV-2 sequence variants Meeting HallWolfgang Maier

18:57 CEST

CorGAT: a tool for the functional annotation of SARS-CoV-2 genomes Meeting HallErika Ferrandi

19:03 CEST

Easy access to NCBI data within Galaxy Meeting HallAdam Stine • Nuala O'Leary

19:09 CEST

Q&A Meeting Hall

19:34 CEST

Americas Session 2 Meeting HallNate Coraor

19:35 CEST

Using Galaxy File Source Plugins to Work with Remote Data including Applications Meeting HallLuke Sargent • John Chilton

19:53 CEST

Overhaul and pagination in Data-Libraries Meeting HallOleg Zharkov

19:59 CEST

Recent updates to Nebulizer: a command line utility for Galaxy admins Meeting HallPeter Briggs

20:05 CEST

How UseGalaxy.EU is managed - tips and tricks from inside Meeting HallGianmauro Cuccuru

20:23 CEST

HPC back-end runner for massive SARS-CoV-2 samples processing Meeting HallHugo Jiménez Hernández

20:29 CEST

Laniakea - Update 2021 Meeting HallMarco Antonio Tangaro

20:35 CEST

Q&A Meeting Hall

22:39 CEST

Americas Session 3 Meeting HallSubina Mehta

22:40 CEST

A Galaxy-based multi-omic workflow for discovery and validation of candidate neoantigen peptides for immuno-oncology Meeting HallTimothy J. Griffin

22:46 CEST

Enhancing the Whole Workflow Experience from Development through Publication and to Execution Meeting HallJohn Chilton

23:04 CEST

Introducing the Intergalactic Workflow Commission Meeting HallMarius van den Beek

23:22 CEST

Publication of BioCompute Objects (IEEE-2791-2020) created from Galaxy workflow invocations Meeting HallCharles [Hadley] King

23:40 CEST

Developing Pro workflows: lessons learned Meeting HallRandy Guertin

23:46 CEST

The WorkflowHub - a registry for workflows Meeting HallIgnacio Eguinoa

23:52 CEST

Q&A Meeting Hall

09:00 CEST

EMEA-APAC Session 4 Meeting HallPeter van Heusden

09:01 CEST

Welcome Meeting HallPeter van Heusden

09:10 CEST

Detection and functional annotation of lncRNA Meeting HallBianca Pasat

09:16 CEST

Automated Deployment of Genome Databases for Marine Brown Algae Using Galaxy Genome Annotation (GGA) Meeting HallLoraine Guéguen

09:22 CEST

Galaxy-ML: An Accessible, Reproducible, and Scalable Machine Learning Toolkit for Biomedicine Meeting HallKaivan Kamali

09:40 CEST

The immuneML Portal: a public Galaxy server for machine learning analysis of adaptive immune receptor repertoires Meeting HallLonneke Scheffer

09:46 CEST

The Galaxy Public Health Community Meeting HallPeter van Heusden

09:52 CEST

A flexible Galaxy-based platform for the analysis of microbial WGS data in public health Meeting HallBert Bogaerts

09:58 CEST

The “ARIES Genomics” Italian public health surveillance system Meeting HallArnold Knijn

10:04 CEST

Fostering Public Health Bioinformatics and Collaboration with GalaxyTrakr Meeting HallJustin Payne

10:10 CEST

Q&A Meeting Hall

10:39 CEST

EMEA-APAC Session 5 Meeting HallMaria Doyle

10:40 CEST

Analysis of Microscopy Data in Galaxy Meeting HallBeatriz Serrano-Solano

10:46 CEST

Bridging Natural Language Processing and Biomedical Data Analysis Meeting HallNancy Ide

11:04 CEST

French EBV operationalization pilot, where Galaxy can help Biodiversity Meeting HallColine Royaux

11:10 CEST

Updates from the Single-Cell Community Meeting HallMehmet Tekman • Wendi Bacon

11:16 CEST

NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy Meeting HallWillem de Koning

11:22 CEST

Using custom Galaxy workflows to reproducibly search for bacteriophage spanin proteins reveals distinct population distributions Meeting HallJolene Ramsey

11:28 CEST

Q&A Meeting Hall

13:39 CEST

EMEA-APAC Session 6 Meeting HallMartin Cech

13:40 CEST

Galaxy Community Update Meeting HallRoss Lazarus • Helena Rasche • Saskia Hiltemann • Andrew Lonie • Bjorn Gruning • Anton Nekrutenko • Jeremy Goecks • The Other Enis Afgan • Daniel Blankenberg • Mike Schatz

14:05 CEST

Modernizing the Galaxy Backend - Data Model Meeting HallThat Other Person

14:11 CEST

Modernizing the Galaxy Backend - Typing and the API Meeting HallDavid López

14:17 CEST

Modernizing the Galaxy Backend - Typing and Dependency Injection Meeting HallJohn Chilton

14:23 CEST

Modernizing the Galaxy Backend - A Task Framework Meeting HallDannon Baker

14:29 CEST

Galaxy for Protected Datasets Meeting HallThe Other Enis Afgan

14:35 CEST

Galaxy Language Server - Develop high-quality Galaxy tool wrappers at intergalactic speed Meeting HallDavid López

14:41 CEST

Galaxy CloudStor Integration - linking national resources for secure data transfer between services Meeting HallGareth Price

14:47 CEST

Q&A Meeting Hall

18:00 CEST

Americas Session 4 Meeting HallJeremy Goecks

18:01 CEST

Welcome Meeting HallJeremy Goecks

18:10 CEST

Detection and functional annotation of lncRNA Meeting HallBianca Pasat

18:16 CEST

Automated Deployment of Genome Databases for Marine Brown Algae Using Galaxy Genome Annotation (GGA) Meeting HallLoraine Guéguen

18:22 CEST

Galaxy-ML: An Accessible, Reproducible, and Scalable Machine Learning Toolkit for Biomedicine Meeting HallKaivan Kamali

18:40 CEST

The immuneML Portal: a public Galaxy server for machine learning analysis of adaptive immune receptor repertoires Meeting HallLonneke Scheffer

18:46 CEST

The Galaxy Public Health Community Meeting HallPeter van Heusden

18:52 CEST

A flexible Galaxy-based platform for the analysis of microbial WGS data in public health Meeting HallBert Bogaerts

18:58 CEST

The “ARIES Genomics” Italian public health surveillance system Meeting HallArnold Knijn

19:04 CEST

Fostering Public Health Bioinformatics and Collaboration with GalaxyTrakr Meeting HallJustin Payne

19:10 CEST

Q&A Meeting Hall

19:39 CEST

Americas Session 5 Meeting HallAnne Fouilloux

19:40 CEST

Analysis of Microscopy Data in Galaxy Meeting HallBeatriz Serrano-Solano

19:46 CEST

Bridging Natural Language Processing and Biomedical Data Analysis Meeting HallNancy Ide

20:04 CEST

French EBV operationalization pilot, where Galaxy can help Biodiversity Meeting HallColine Royaux

20:10 CEST

Updates from the Single-Cell Community Meeting HallMehmet Tekman • Wendi Bacon

20:16 CEST

NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy Meeting HallWillem de Koning

20:22 CEST

Using custom Galaxy workflows to reproducibly search for bacteriophage spanin proteins reveals distinct population distributions Meeting HallJolene Ramsey

20:28 CEST

Q&A Meeting Hall

22:39 CEST

Americas Session 6 Meeting HallBrad Langhorst

22:40 CEST

Galaxy Community Update Meeting HallRoss Lazarus • Helena Rasche • Saskia Hiltemann • Andrew Lonie • Bjorn Gruning • Anton Nekrutenko • Jeremy Goecks • The Other Enis Afgan • Daniel Blankenberg • Mike Schatz

23:05 CEST

Modernizing the Galaxy Backend - Data Model Meeting HallThat Other Person

23:11 CEST

Modernizing the Galaxy Backend - Typing and the API Meeting HallDavid López

23:17 CEST

Modernizing the Galaxy Backend - Typing and Dependency Injection Meeting HallJohn Chilton

23:23 CEST

Modernizing the Galaxy Backend - A Task Framework Meeting HallDannon Baker

23:29 CEST

Galaxy for Protected Datasets Meeting HallThe Other Enis Afgan

23:35 CEST

Galaxy Language Server - Develop high-quality Galaxy tool wrappers at intergalactic speed Meeting HallDavid López

23:41 CEST

Galaxy CloudStor Integration - linking national resources for secure data transfer between services Meeting HallGareth Price

23:47 CEST

Q&A Meeting Hall

09:00 CEST

EMEA-APAC Session 7 Meeting HallBérénice Batut

09:01 CEST

Welcome Meeting HallBérénice Batut

09:10 CEST

Galaxy Training Network (GTN) Community Update Meeting HallHelena Rasche • Saskia Hiltemann

09:28 CEST

Using the Galaxy (Australia) Database to Aid an Undergraduate Investigation of RNF43 Mutations as Biomarkers for ctDNA Surveillance of Colorectal Cancer Meeting HallJordon Lima

09:34 CEST

Open Life Science: An Open Research mentoring and training program Meeting HallMuhammet A. Celik

09:40 CEST

Galaxy Australia - the influx state of a national eResearch service Meeting HallSimon Gladman • Gareth Price

09:58 CEST

Community engagement and how it influences Galaxy Australia Innovation Meeting HallJohan Gustafsson

10:16 CEST

Q&A Meeting Hall

10:44 CEST

EMEA-APAC Session 8 Meeting HallAnshu Bhardwaj

10:45 CEST

Quantitative Metaproteomics using Galaxy Platform: Measuring Functional Microbiome via Data-Dependent and Data-Independent Acquisition Mass Spec Meeting HallPratik Jagtap • Subina Mehta

11:03 CEST

A Galaxy-based evaluation of optimal peptide targets for MS-based detection of SARS-CoV-2 in clinical samples Meeting HallAndrew T. Rajczewski

11:21 CEST

MaxQuant and MSstats in Galaxy enable reproducible quantitative high-throughput proteomics for everyone Meeting HallMelanie Föll

11:27 CEST

Peptide mass spectrometry imaging of pancreatic cancers – A data analysis workflow in Galaxy Meeting HallMaren Stillger

11:33 CEST

XIMG-CHESS: a Galaxy based Science Gateway for X-ray Diffraction Imaging and Microstructure Modeling Meeting HallJorge Vinals

11:39 CEST

Muon Galaxy – extending Galaxy for muon science Meeting HallEli Chadwick

11:45 CEST

Q&A Meeting Hall

13:54 CEST

EMEA-APAC Session 9 Meeting HallSaskia Hiltemann

13:55 CEST

A single stack for dev, testing, and production: Galaxy Helm Chart v4 Meeting HallNuwan Goonasekera

14:13 CEST

Browser Development Environment for Galaxy Powered by Kubernetes Meeting HallAlexandru Mahmoud

14:19 CEST

Interactive Tools in Galaxy on Kubernetes Meeting HallAlexandru Mahmoud

14:25 CEST

An automatic tool installer with integrated testing for a public Galaxy Meeting HallCatherine Bromhead

14:31 CEST

Q&A Meeting Hall

14:40 CEST

Closing Meeting Hall

18:00 CEST

Americas Session 7 Meeting HallBeatriz Serrano-Solano

18:01 CEST

Welcome Meeting HallBeatriz Serrano-Solano

18:10 CEST

Galaxy Training Network (GTN) Community Update Meeting HallHelena Rasche • Saskia Hiltemann

18:28 CEST

Using the Galaxy (Australia) Database to Aid an Undergraduate Investigation of RNF43 Mutations as Biomarkers for ctDNA Surveillance of Colorectal Cancer Meeting HallJordon Lima

18:34 CEST

Open Life Science: An Open Research mentoring and training program Meeting HallMuhammet A. Celik

18:40 CEST

Galaxy Australia - the influx state of a national eResearch service Meeting HallSimon Gladman • Gareth Price

18:58 CEST

Community engagement and how it influences Galaxy Australia Innovation Meeting HallJohan Gustafsson

19:16 CEST

Q&A Meeting Hall

19:44 CEST

Americas Session 8 Meeting HallPratik Jagtap

19:45 CEST

Quantitative Metaproteomics using Galaxy Platform: Measuring Functional Microbiome via Data-Dependent and Data-Independent Acquisition Mass Spec Meeting HallPratik Jagtap • Subina Mehta

20:03 CEST

A Galaxy-based evaluation of optimal peptide targets for MS-based detection of SARS-CoV-2 in clinical samples Meeting HallAndrew T. Rajczewski

20:21 CEST

MaxQuant and MSstats in Galaxy enable reproducible quantitative high-throughput proteomics for everyone Meeting HallMelanie Föll

20:27 CEST

Peptide mass spectrometry imaging of pancreatic cancers – A data analysis workflow in Galaxy Meeting HallMaren Stillger

20:33 CEST

XIMG-CHESS: a Galaxy based Science Gateway for X-ray Diffraction Imaging and Microstructure Modeling Meeting HallJorge Vinals

20:39 CEST

Muon Galaxy – extending Galaxy for muon science Meeting HallEli Chadwick

20:45 CEST

Q&A Meeting Hall

22:54 CEST

Americas Session 9 Meeting HallDaniel Blankenberg

22:55 CEST

A single stack for dev, testing, and production: Galaxy Helm Chart v4 Meeting HallNuwan Goonasekera

23:13 CEST

Browser Development Environment for Galaxy Powered by Kubernetes Meeting HallAlexandru Mahmoud

23:19 CEST

Interactive Tools in Galaxy on Kubernetes Meeting HallAlexandru Mahmoud

23:25 CEST

An automatic tool installer with integrated testing for a public Galaxy Meeting HallCatherine Bromhead

23:31 CEST

Q&A Meeting Hall

23:40 CEST

Closing Meeting Hall

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