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GCC2021 is governed by the VIB Conferences Code of Conduct.

The 2021 Galaxy Community Conference (GCC2021) is virtual and global, accessible in any time zone, on every continent, and in every country.  GCC2021 events are held twice, once in the original Ghent time zone (GCC EMEA+APAC), and again 9 hours later (GCC Americas).

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avatar for Pratik Jagtap

Pratik Jagtap

University of Minnesota
Research Assistant Professor
Minneapolis, Minnesota
Websitehttps://z.umn.edu/pjgs
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Metaproteomics . DIA . Proteogenomics

My Friends

  • avatar for Bérénice Batut
  • avatar for Yvan Le Bras



Thursday, July 1
 

00:00 CEST

GCC2021 Training Week: Galaxy for Scientists Track (Monday-Friday) Training Slack

18:00 CEST

Open House Galactic Cafe
 
Friday, July 2
 

00:00 CEST

GCC2021 Training Week: Galaxy for Scientists Track (Monday-Friday) Training Slack
 
Tuesday, July 6
 

09:01 CEST

Welcome Meeting HallFrederik Coppens

09:33 CEST

Supporting the COVID-19 Data portal: viral data cleaning from human reads and submission to ENA Meeting HallIgnacio Eguinoa

09:39 CEST

Galaxy as a global platform for the analysis of SARS-CoV-2 sequence variants Meeting HallWolfgang Maier

09:57 CEST

CorGAT: a tool for the functional annotation of SARS-CoV-2 genomes Meeting HallErika Ferrandi

11:05 CEST

How UseGalaxy.EU is managed - tips and tricks from inside Meeting HallGianmauro Cuccuru

12:00 CEST

Tu-2.3: ComPIL 2.0 and MetaNovo Tools for Metaproteomics Searches Within Galaxy: Searching for Needles in a Haystack Poster / Demo / Sponsor HallReid Wagner Tu-2.5: Galaxy as a global platform for the analysis of SARS-CoV-2 sequence variants Poster / Demo / Sponsor HallWolfgang Maier Tu-2.6: Easy access to NCBI data within Galaxy Poster / Demo / Sponsor HallAdam Stine • Nuala O'Leary Tu-2.7: Galaxy-E project: 2021 News Poster / Demo / Sponsor HallYvan Le Bras Tu-3.6: Use of Galaxy tools for microbiome analysis of breast cancer RNA-seq transcriptomic data Poster / Demo / Sponsor HallDominik Hadzega

13:40 CEST

A Galaxy-based multi-omic workflow for discovery and validation of candidate neoantigen peptides for immuno-oncology Meeting HallTimothy J. Griffin

13:46 CEST

Enhancing the Whole Workflow Experience from Development through Publication and to Execution Meeting HallJohn Chilton

14:04 CEST

Introducing the Intergalactic Workflow Commission Meeting HallMarius van den Beek

14:40 CEST

Developing Pro workflows: lessons learned Meeting HallRandy Guertin

14:46 CEST

The WorkflowHub - a registry for workflows Meeting HallIgnacio Eguinoa

15:20 CEST

BoF: Galaxy & Bioinformatics in Africa Galactic CafePeter van Heusden • Tracey Calvert-Joshua BoF: Galaxy for Microbiome - Kickoff Galactic CafeBérénice Batut • Saskia Hiltemann

16:30 CEST

Opening Social Galactic Cafe

18:33 CEST

Supporting the COVID-19 Data portal: viral data cleaning from human reads and submission to ENA Meeting HallIgnacio Eguinoa

18:39 CEST

Galaxy as a global platform for the analysis of SARS-CoV-2 sequence variants Meeting HallWolfgang Maier

21:00 CEST

Tu-2.3: ComPIL 2.0 and MetaNovo Tools for Metaproteomics Searches Within Galaxy: Searching for Needles in a Haystack Poster / Demo / Sponsor HallReid Wagner Tu-2.4: Diversity of pleurocidin-like antimicrobial peptides in a marine bony fish (Sparus aurata) by re-identification in ESTs Poster / Demo / Sponsor HallJhon Alberto Serna Duque Tu-2.5: Galaxy as a global platform for the analysis of SARS-CoV-2 sequence variants Poster / Demo / Sponsor HallWolfgang Maier Tu-3.6: Use of Galaxy tools for microbiome analysis of breast cancer RNA-seq transcriptomic data Poster / Demo / Sponsor HallDominik Hadzega

22:40 CEST

A Galaxy-based multi-omic workflow for discovery and validation of candidate neoantigen peptides for immuno-oncology Meeting HallTimothy J. Griffin

22:46 CEST

Enhancing the Whole Workflow Experience from Development through Publication and to Execution Meeting HallJohn Chilton

23:04 CEST

Introducing the Intergalactic Workflow Commission Meeting HallMarius van den Beek

23:46 CEST

The WorkflowHub - a registry for workflows Meeting HallIgnacio Eguinoa
 
Wednesday, July 7
 

08:00 CEST

BoF: Namaste, Galaxy India! Galactic CafeAnshu Bhardwaj • Kiran K Telukunta • Prashanth Suravajhala • Harpreet Singh • Kirtan Dave

09:10 CEST

Detection and functional annotation of lncRNA Meeting HallBianca Pasat

09:52 CEST

A flexible Galaxy-based platform for the analysis of microbial WGS data in public health Meeting HallBert Bogaerts

11:22 CEST

Using custom Galaxy workflows to reproducibly search for bacteriophage spanin proteins reveals distinct population distributions Meeting HallJolene Ramsey

12:00 CEST

W-3.7: A flexible Galaxy-based platform for the analysis of microbial WGS data in public health Poster / Demo / Sponsor HallBert Bogaerts W-4.10: Using custom Galaxy workflows to reproducibly search for bacteriophage spanin proteins reveals distinct population distributions Poster / Demo / Sponsor HallJolene Ramsey W-4.5: Gallantries: Scalable, Modular Bioinformatics Curricula Poster / Demo / Sponsor HallHelena Rasche W-4.7: The next-generation Galaxy community site Poster / Demo / Sponsor HallNick Stoler W-4.9: Taxonomic Classification Analysis of Human Gut Microbiota Using Kraken 2 Poster / Demo / Sponsor HallNihan Sultan Milat

13:40 CEST

Galaxy Community Update Meeting HallRoss Lazarus • Helena Rasche • Saskia Hiltemann • Andrew Lonie • Bjorn Gruning • Anton Nekrutenko • Jeremy Goecks • The Other Enis Afgan • Daniel Blankenberg • Mike Schatz

14:05 CEST

Modernizing the Galaxy Backend - Data Model Meeting HallThat Other Person

14:17 CEST

Modernizing the Galaxy Backend - Typing and Dependency Injection Meeting HallJohn Chilton

14:35 CEST

Galaxy Language Server - Develop high-quality Galaxy tool wrappers at intergalactic speed Meeting HallDavid López

15:20 CEST

BoF: Celestial Masses: Galaxy Platform for Mass Spectrometry Research Galactic CafePratik Jagtap • Melanie Föll

18:10 CEST

Detection and functional annotation of lncRNA Meeting HallBianca Pasat

18:52 CEST

A flexible Galaxy-based platform for the analysis of microbial WGS data in public health Meeting HallBert Bogaerts

20:22 CEST

Using custom Galaxy workflows to reproducibly search for bacteriophage spanin proteins reveals distinct population distributions Meeting HallJolene Ramsey

21:00 CEST

W-3.7: A flexible Galaxy-based platform for the analysis of microbial WGS data in public health Poster / Demo / Sponsor HallBert Bogaerts

22:40 CEST

Galaxy Community Update Meeting HallRoss Lazarus • Helena Rasche • Saskia Hiltemann • Andrew Lonie • Bjorn Gruning • Anton Nekrutenko • Jeremy Goecks • The Other Enis Afgan • Daniel Blankenberg • Mike Schatz
 
Thursday, July 8
 

00:20 CEST

BoF: Galaxy community roadmap planning Galactic CafeRoss Lazarus

08:00 CEST

BoF: Galaxy & Training / Teaching Galactic CafeBjorn Gruning • Bérénice Batut • Helena Rasche • Saskia Hiltemann • Beatriz Serrano-Solano

09:10 CEST

Galaxy Training Network (GTN) Community Update Meeting HallHelena Rasche • Saskia Hiltemann

09:34 CEST

Open Life Science: An Open Research mentoring and training program Meeting HallMuhammet A. Celik

09:40 CEST

Galaxy Australia - the influx state of a national eResearch service Meeting HallSimon Gladman • Gareth Price

09:58 CEST

Community engagement and how it influences Galaxy Australia Innovation Meeting HallJohan Gustafsson

10:45 CEST

Quantitative Metaproteomics using Galaxy Platform: Measuring Functional Microbiome via Data-Dependent and Data-Independent Acquisition Mass Spec Meeting HallPratik Jagtap • Subina Mehta

11:03 CEST

A Galaxy-based evaluation of optimal peptide targets for MS-based detection of SARS-CoV-2 in clinical samples Meeting HallAndrew T. Rajczewski

11:21 CEST

MaxQuant and MSstats in Galaxy enable reproducible quantitative high-throughput proteomics for everyone Meeting HallMelanie Föll

11:27 CEST

Peptide mass spectrometry imaging of pancreatic cancers – A data analysis workflow in Galaxy Meeting HallMaren Stillger

11:33 CEST

XIMG-CHESS: a Galaxy based Science Gateway for X-ray Diffraction Imaging and Microstructure Modeling Meeting HallJorge Vinals

11:39 CEST

Muon Galaxy – extending Galaxy for muon science Meeting HallEli Chadwick

11:45 CEST

Q&A Meeting Hall

12:15 CEST

Th-5.8: CloudForest: Dockerized Galaxy as a Platform for an Integrated Phylogenomics Software Workflow Poster / Demo / Sponsor HallReid Wagner Th-6.6: MaxQuant and MSstats in Galaxy enable reproducible quantitative high-throughput proteomics for everyone Poster / Demo / Sponsor HallNiko Pinter Th-6.8: Peptide mass spectrometry imaging of pancreatic cancers – A data analysis workflow in Galaxy Poster / Demo / Sponsor HallMaren Stillger

14:40 CEST

Closing Meeting Hall

15:20 CEST

BoF: IDC - Intergalactic (reference) Data Commission Galactic CafeLucille Delisle • Ignacio Eguinoa

18:10 CEST

Galaxy Training Network (GTN) Community Update Meeting HallHelena Rasche • Saskia Hiltemann

18:40 CEST

Galaxy Australia - the influx state of a national eResearch service Meeting HallSimon Gladman • Gareth Price

18:58 CEST

Community engagement and how it influences Galaxy Australia Innovation Meeting HallJohan Gustafsson

19:45 CEST

Quantitative Metaproteomics using Galaxy Platform: Measuring Functional Microbiome via Data-Dependent and Data-Independent Acquisition Mass Spec Meeting HallPratik Jagtap • Subina Mehta

20:03 CEST

A Galaxy-based evaluation of optimal peptide targets for MS-based detection of SARS-CoV-2 in clinical samples Meeting HallAndrew T. Rajczewski

20:21 CEST

MaxQuant and MSstats in Galaxy enable reproducible quantitative high-throughput proteomics for everyone Meeting HallMelanie Föll

20:27 CEST

Peptide mass spectrometry imaging of pancreatic cancers – A data analysis workflow in Galaxy Meeting HallMaren Stillger

20:45 CEST

Q&A Meeting Hall

21:15 CEST

Th-6.5: Galaxy GFF3 tool suite for manipulation, conversion and deposition of genome data Poster / Demo / Sponsor HallAnthony Criscione Th-6.6: MaxQuant and MSstats in Galaxy enable reproducible quantitative high-throughput proteomics for everyone Poster / Demo / Sponsor HallNiko Pinter Th-6.8: Peptide mass spectrometry imaging of pancreatic cancers – A data analysis workflow in Galaxy Poster / Demo / Sponsor HallMaren Stillger

23:40 CEST

Closing Meeting Hall
 
Friday, July 9
 

03:00 CEST

GCC2021 CollaborationFest Galactic Cafe
 
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