GCC2021 has ended

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GCC2021

GCC2021 is governed by the VIB Conferences Code of Conduct.

The 2021 Galaxy Community Conference (GCC2021) is virtual and global, accessible in any time zone, on every continent, and in every country. GCC2021 events are held twice, once in the original Ghent time zone (GCC EMEA+APAC), and again 9 hours later (GCC Americas).

⇨⇨⇨ Select your timezone to see events in your local time ⇦⇦⇦

00:00 CEST

GCC2021 Training Week: Galaxy for Administrators Track (Monday-Friday) Training Slack GCC2021 Training Week: Galaxy for Developers Track (Monday-Friday) Training Slack GCC2021 Training Week: Galaxy for Scientists Track (Monday-Friday) Training Slack

00:00 CEST

GCC2021 Training Week: Galaxy for Administrators Track (Monday-Friday) Training Slack GCC2021 Training Week: Galaxy for Developers Track (Monday-Friday) Training Slack GCC2021 Training Week: Galaxy for Scientists Track (Monday-Friday) Training Slack

00:00 CEST

GCC2021 Training Week: Galaxy for Administrators Track (Monday-Friday) Training Slack GCC2021 Training Week: Galaxy for Developers Track (Monday-Friday) Training Slack GCC2021 Training Week: Galaxy for Scientists Track (Monday-Friday) Training Slack

00:00 CEST

GCC2021 Training Week: Galaxy for Administrators Track (Monday-Friday) Training Slack GCC2021 Training Week: Galaxy for Developers Track (Monday-Friday) Training Slack GCC2021 Training Week: Galaxy for Scientists Track (Monday-Friday) Training Slack

10:00 CEST

Open House Galactic Cafe

18:00 CEST

Open House Galactic Cafe

00:00 CEST

GCC2021 Training Week: Galaxy for Administrators Track (Monday-Friday) Training Slack GCC2021 Training Week: Galaxy for Developers Track (Monday-Friday) Training Slack GCC2021 Training Week: Galaxy for Scientists Track (Monday-Friday) Training Slack

10:00 CEST

Open House Social Building

18:00 CEST

Open House Social Building

01:00 CEST

Open House! Meeting Hall

08:59 CEST

EMEA-APAC Conference Day 1 Remo+Slack

09:00 CEST

EMEA-APAC Session 1 Meeting HallAndrew Lonie

09:01 CEST

Welcome Meeting HallFrederik Coppens

09:15 CEST

Enabling widespread use of Vertebrate Genome Project assembly pipeline by integration into Galaxy Meeting HallDelphine Lariviere • Alex Ostrovsky

09:33 CEST

Supporting the COVID-19 Data portal: viral data cleaning from human reads and submission to ENA Meeting HallIgnacio Eguinoa

09:39 CEST

Galaxy as a global platform for the analysis of SARS-CoV-2 sequence variants Meeting HallWolfgang Maier

09:57 CEST

CorGAT: a tool for the functional annotation of SARS-CoV-2 genomes Meeting HallErika Ferrandi

10:03 CEST

Easy access to NCBI data within Galaxy Meeting HallAdam Stine • Nuala O'Leary

10:09 CEST

Q&A Meeting Hall

10:15 CEST

Break Remo+Slack

10:34 CEST

EMEA-APAC Session 2 Meeting HallLucille Delisle

10:35 CEST

Using Galaxy File Source Plugins to Work with Remote Data including Applications Meeting HallJohn Chilton • Luke Sargent

10:53 CEST

Overhaul and pagination in Data-Libraries Meeting HallOleg Zharkov

10:59 CEST

Recent updates to Nebulizer: a command line utility for Galaxy admins Meeting HallPeter Briggs

11:05 CEST

How UseGalaxy.EU is managed - tips and tricks from inside Meeting HallGianmauro Cuccuru

11:23 CEST

HPC back-end runner for massive SARS-CoV-2 samples processing Meeting HallHugo Jiménez Hernández

11:29 CEST

Laniakea - Update 2021 Meeting HallMarco Antonio Tangaro

11:35 CEST

Q&A Meeting Hall

11:40 CEST

Break Remo+Slack

11:59 CEST

EMEA-APAC Tuesday Poster / Demo / Sponsor Session Poster / Demo / Sponsor Hall

12:00 CEST

F1000Research Poster / Demo / Sponsor HallDemitra Ellina Tu-2.10: Laniakea@ReCaS: first year of activity of a Laniakea-based Galaxy “on-demand” service Poster / Demo / Sponsor Hallpietro mandreoli Tu-2.2: Automating Galaxy tool requirement updates with Planemo Poster / Demo / Sponsor HallSimon Bray Tu-2.3: ComPIL 2.0 and MetaNovo Tools for Metaproteomics Searches Within Galaxy: Searching for Needles in a Haystack Poster / Demo / Sponsor HallReid Wagner Tu-2.4: Diversity of pleurocidin-like antimicrobial peptides in a marine bony fish (Sparus aurata) by re-identification in ESTs Poster / Demo / Sponsor HallJhon Alberto Serna Duque Tu-2.5: Galaxy as a global platform for the analysis of SARS-CoV-2 sequence variants Poster / Demo / Sponsor HallWolfgang Maier Tu-2.6: Easy access to NCBI data within Galaxy Poster / Demo / Sponsor HallAdam Stine • Nuala O'Leary Tu-2.7: Galaxy-E project: 2021 News Poster / Demo / Sponsor HallYvan Le Bras Tu-2.8: Janis for workflow translation – a potential benefit to the Galaxy ecosystem Poster / Demo / Sponsor HallRichard Lupat Tu-2.9: Enabling widespread use of Vertebrate Genome Project assembly pipeline by integration into Galaxy Poster / Demo / Sponsor HallDelphine Lariviere • Alex Ostrovsky Tu-3.2: Genome-wide predictions and structural modeling of protein-protein interactions using Galaxy Poster / Demo / Sponsor HallAysam Guerler Tu-3.3: Practical aspects of implementing the IRIDA system as a solution for One Health bioinformatics analyses Poster / Demo / Sponsor HallJeevan Karloss Antony Samy Tu-3.4: Recent updates to Nebulizer: a command line utility for Galaxy admins Poster / Demo / Sponsor HallPeter Briggs Tu-3.5: Streamlining accessibility and computability of large-scale genomic datasets with the NHGRI genome data science Analysis, Visualization, and Informatics Lab-Space (ANVIL) Poster / Demo / Sponsor HallStephen Mosher Tu-3.6: Use of Galaxy tools for microbiome analysis of breast cancer RNA-seq transcriptomic data Poster / Demo / Sponsor HallDominik Hadzega

13:20 CEST

Break Remo+Slack

13:25 CEST

Remo Reset Remo+Slack

13:39 CEST

EMEA-APAC Session 3 Meeting HallJennifer Harrow

13:40 CEST

A Galaxy-based multi-omic workflow for discovery and validation of candidate neoantigen peptides for immuno-oncology Meeting HallTimothy J. Griffin

13:46 CEST

Enhancing the Whole Workflow Experience from Development through Publication and to Execution Meeting HallJohn Chilton

14:04 CEST

Introducing the Intergalactic Workflow Commission Meeting HallMarius van den Beek

14:22 CEST

Publication of BioCompute Objects (IEEE-2791-2020) created from Galaxy workflow invocations Meeting HallCharles [Hadley] King

14:40 CEST

Developing Pro workflows: lessons learned Meeting HallRandy Guertin

14:46 CEST

The WorkflowHub - a registry for workflows Meeting HallIgnacio Eguinoa

14:52 CEST

Q&A Meeting Hall

15:00 CEST

Break Remo+Slack

15:20 CEST

Birds of a Feather (BOFs) Galactic Cafe BoF: Galaxy & Bioinformatics in Africa Galactic CafePeter van Heusden • Tracey Calvert-Joshua BoF: Galaxy for Microbiome - Kickoff Galactic CafeBérénice Batut • Saskia Hiltemann

16:30 CEST

Opening Social Galactic Cafe

17:45 CEST

Remo Reset Remo+Slack

00:20 CEST

Birds of a Feather (BOFs) Galactic Cafe

07:59 CEST

EMEA-APAC Conference Day 2 Remo+Slack

08:00 CEST

Birds of a Feather (BOFs) Galactic Cafe BoF: Addressing common misconceptions about Galaxy Galactic CafeHans-Rudolf Hotz BoF: Namaste, Galaxy India! Galactic CafeAnshu Bhardwaj • Kiran K Telukunta • Prashanth Suravajhala • Harpreet Singh • Kirtan Dave BoF: Rainbow Galaxy People (LGBTQIA) Galactic CafeMichael R. Crusoe • Helena Rasche

09:00 CEST

EMEA-APAC Session 4 Meeting HallPeter van Heusden

09:01 CEST

Welcome Meeting HallPeter van Heusden

09:10 CEST

Detection and functional annotation of lncRNA Meeting HallBianca Pasat

09:16 CEST

Automated Deployment of Genome Databases for Marine Brown Algae Using Galaxy Genome Annotation (GGA) Meeting HallLoraine Guéguen

09:22 CEST

Galaxy-ML: An Accessible, Reproducible, and Scalable Machine Learning Toolkit for Biomedicine Meeting HallKaivan Kamali

09:40 CEST

The immuneML Portal: a public Galaxy server for machine learning analysis of adaptive immune receptor repertoires Meeting HallLonneke Scheffer

09:46 CEST

The Galaxy Public Health Community Meeting HallPeter van Heusden

09:52 CEST

A flexible Galaxy-based platform for the analysis of microbial WGS data in public health Meeting HallBert Bogaerts

09:58 CEST

The “ARIES Genomics” Italian public health surveillance system Meeting HallArnold Knijn

10:04 CEST

Fostering Public Health Bioinformatics and Collaboration with GalaxyTrakr Meeting HallJustin Payne

10:10 CEST

Q&A Meeting Hall

10:20 CEST

Break Remo+Slack

10:39 CEST

EMEA-APAC Session 5 Meeting HallMaria Doyle

10:40 CEST

Analysis of Microscopy Data in Galaxy Meeting HallBeatriz Serrano-Solano

10:46 CEST

Bridging Natural Language Processing and Biomedical Data Analysis Meeting HallNancy Ide

11:04 CEST

French EBV operationalization pilot, where Galaxy can help Biodiversity Meeting HallColine Royaux

11:10 CEST

Updates from the Single-Cell Community Meeting HallMehmet Tekman • Wendi Bacon

11:16 CEST

NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy Meeting HallWillem de Koning

11:22 CEST

Using custom Galaxy workflows to reproducibly search for bacteriophage spanin proteins reveals distinct population distributions Meeting HallJolene Ramsey

11:28 CEST

Q&A Meeting Hall

11:40 CEST

Break Remo+Slack

11:45 CEST

Remo Reset Remo+Slack

11:59 CEST

EMEA-APAC Wednesday Poster / Demo / Sponsor Session Poster / Demo / Sponsor Hall

12:00 CEST

W-4.3: Galaxy and Research Lifecycle Management technologies for Earth Science Communities and Copernicus users in EOSC Poster / Demo / Sponsor HallAnne Fouilloux F1000Research Poster / Demo / Sponsor HallDemitra Ellina W-3.10: Detection and functional annotation of lncRNA Poster / Demo / Sponsor HallBianca Pasat W-3.11: GalaxyLab: A JupyterLab extension for interactive graphical and programmatic access to Galaxy Poster / Demo / Sponsor Halljayadev joshi W-3.7: A flexible Galaxy-based platform for the analysis of microbial WGS data in public health Poster / Demo / Sponsor HallBert Bogaerts W-3.8: EDAM ontology, tools, and community Poster / Demo / Sponsor HallHager Eldakroury • Melissa W-3.9: Automated Deployment of Genome Databases for Marine Brown Algae Using Galaxy Genome Annotation (GGA) Poster / Demo / Sponsor HallLoraine Guéguen • Arthur Le Bars W-4.10: Using custom Galaxy workflows to reproducibly search for bacteriophage spanin proteins reveals distinct population distributions Poster / Demo / Sponsor HallJolene Ramsey W-4.11: The “ARIES Genomics” Italian public health surveillance system Poster / Demo / Sponsor HallArnold Knijn W-4.2: Driving workforce transition in Australian life science research Poster / Demo / Sponsor HallAnna Syme W-4.4: Publication of BioCompute Objects (IEEE-2791-2020) created from Galaxy workflow invocations Poster / Demo / Sponsor HallCharles [Hadley] King W-4.5: Gallantries: Scalable, Modular Bioinformatics Curricula Poster / Demo / Sponsor HallHelena Rasche W-4.7: The next-generation Galaxy community site Poster / Demo / Sponsor HallNick Stoler W-4.8: GPU enabled Jupyterlab notebook for deep learning using Tensorflow in Galaxy Poster / Demo / Sponsor HallAnup Kumar W-4.9: Taxonomic Classification Analysis of Human Gut Microbiota Using Kraken 2 Poster / Demo / Sponsor HallNihan Sultan Milat

13:20 CEST

Break Remo+Slack

13:39 CEST

EMEA-APAC Session 6 Meeting HallMartin Cech

13:40 CEST

Galaxy Community Update Meeting HallRoss Lazarus • Helena Rasche • Saskia Hiltemann • Andrew Lonie • Bjorn Gruning • Anton Nekrutenko • Jeremy Goecks • The Other Enis Afgan • Daniel Blankenberg • Mike Schatz

14:05 CEST

Modernizing the Galaxy Backend - Data Model Meeting HallThat Other Person

14:11 CEST

Modernizing the Galaxy Backend - Typing and the API Meeting HallDavid López

14:17 CEST

Modernizing the Galaxy Backend - Typing and Dependency Injection Meeting HallJohn Chilton

14:23 CEST

Modernizing the Galaxy Backend - A Task Framework Meeting HallDannon Baker

14:29 CEST

Galaxy for Protected Datasets Meeting HallThe Other Enis Afgan

14:35 CEST

Galaxy Language Server - Develop high-quality Galaxy tool wrappers at intergalactic speed Meeting HallDavid López

14:41 CEST

Galaxy CloudStor Integration - linking national resources for secure data transfer between services Meeting HallGareth Price

14:47 CEST

Q&A Meeting Hall

15:00 CEST

Break Remo+Slack

15:20 CEST

Birds of a Feather (BOFs) Galactic Cafe BoF: Celestial Masses: Galaxy Platform for Mass Spectrometry Research Galactic CafePratik Jagtap • Melanie Föll BoF: Galaxy Public Health Community Galactic CafePeter van Heusden • Karin Lagesen • Arnold Knijn

16:45 CEST

Remo Reset Remo+Slack

17:00 CEST

Birds of a Feather (BOFs) Galactic Cafe BoF: Accessing NCBI Data in Galaxy Galactic CafeAdelaide Rhodes • Eric Cox • Nuala O'Leary BoF: At the edge of the Galaxy, the lonely life of a (small scale) local Galaxy server admin Galactic CafeHans-Rudolf Hotz • Lucille Delisle BoF: Boost the diversity in your community: Outreachy and other internship-mentorship initiatives Galactic CafeMatúš Kalas • Hager Eldakroury • Melissa

00:20 CEST

Birds of a Feather (BOFs) Galactic Cafe

07:59 CEST

EMEA-APAC Conference Day 3 Remo+Slack

08:00 CEST

Birds of a Feather (BOFs) Galactic Cafe BoF: Galaxy & Training / Teaching Galactic CafeBjorn Gruning • Bérénice Batut • Helena Rasche • Saskia Hiltemann • Beatriz Serrano-Solano

09:00 CEST

EMEA-APAC Session 7 Meeting HallBérénice Batut

09:01 CEST

Welcome Meeting HallBérénice Batut

09:10 CEST

Galaxy Training Network (GTN) Community Update Meeting HallHelena Rasche • Saskia Hiltemann

09:28 CEST

Using the Galaxy (Australia) Database to Aid an Undergraduate Investigation of RNF43 Mutations as Biomarkers for ctDNA Surveillance of Colorectal Cancer Meeting HallJordon Lima

09:34 CEST

Open Life Science: An Open Research mentoring and training program Meeting HallMuhammet A. Celik

09:40 CEST

Galaxy Australia - the influx state of a national eResearch service Meeting HallSimon Gladman • Gareth Price

09:58 CEST

Community engagement and how it influences Galaxy Australia Innovation Meeting HallJohan Gustafsson

10:16 CEST

Q&A Meeting Hall

10:25 CEST

Break Remo+Slack

10:44 CEST

EMEA-APAC Session 8 Meeting HallAnshu Bhardwaj

10:45 CEST

Quantitative Metaproteomics using Galaxy Platform: Measuring Functional Microbiome via Data-Dependent and Data-Independent Acquisition Mass Spec Meeting HallPratik Jagtap • Subina Mehta

11:03 CEST

A Galaxy-based evaluation of optimal peptide targets for MS-based detection of SARS-CoV-2 in clinical samples Meeting HallAndrew T. Rajczewski

11:21 CEST

MaxQuant and MSstats in Galaxy enable reproducible quantitative high-throughput proteomics for everyone Meeting HallMelanie Föll

11:27 CEST

Peptide mass spectrometry imaging of pancreatic cancers – A data analysis workflow in Galaxy Meeting HallMaren Stillger

11:33 CEST

XIMG-CHESS: a Galaxy based Science Gateway for X-ray Diffraction Imaging and Microstructure Modeling Meeting HallJorge Vinals

11:39 CEST

Muon Galaxy – extending Galaxy for muon science Meeting HallEli Chadwick

11:45 CEST

Q&A Meeting Hall

11:55 CEST

Break Remo+Slack

12:05 CEST

Remo Reset Remo+Slack

12:14 CEST

EMEA-APAC Thursday Poster / Demo / Sponsor Session Poster / Demo / Sponsor Hall

12:15 CEST

F1000Research Poster / Demo / Sponsor HallDemitra Ellina Th-5.2: Addressing the demand for secure and scalable on-demand Galaxy platforms Poster / Demo / Sponsor HallThe Other Enis Afgan Th-5.3: An automatic tool installer with integrated testing for a public Galaxy Poster / Demo / Sponsor HallCatherine Bromhead Th-5.4: ARIAWeb: a new web service for automated NMR structure calculation with ARIA Poster / Demo / Sponsor HallFabien Mareuil Th-5.5: Augmenting Galaxy with GPU Support for Speeding Up Scientific Applications Poster / Demo / Sponsor HallGulsum Gudukbay Th-5.6: Building a Disaster Recovery option for Galaxy Australia Poster / Demo / Sponsor HallNicholas Rhodes Th-5.7: Comparative genomic analysis of the pink pigmented facultative methylotrophs (PPFMs) Poster / Demo / Sponsor HallOla Alessa Th-5.8: CloudForest: Dockerized Galaxy as a Platform for an Integrated Phylogenomics Software Workflow Poster / Demo / Sponsor HallReid Wagner Th-6.2: Efficient Tool Development within Enterprise Poster / Demo / Sponsor HallPeter Selten Th-6.3: Galaxy Genome Annotation (GGA) environment in the cloud Poster / Demo / Sponsor HallRomain Dallet Th-6.4: From the landscape to the plant: Integrating, visualizing and analyzing plant environment, phenotype and genotype using CartograPlant, WildType and Tripal Galaxy Poster / Demo / Sponsor HallIrene Cobo-Simon Th-6.5: Galaxy GFF3 tool suite for manipulation, conversion and deposition of genome data Poster / Demo / Sponsor HallAnthony Criscione Th-6.6: MaxQuant and MSstats in Galaxy enable reproducible quantitative high-throughput proteomics for everyone Poster / Demo / Sponsor HallNiko Pinter Th-6.7: New User Welcome: A customizable, beginner-friendly introduction into Galaxy Poster / Demo / Sponsor HallAlex Ostrovsky Th-6.8: Peptide mass spectrometry imaging of pancreatic cancers – A data analysis workflow in Galaxy Poster / Demo / Sponsor HallMaren Stillger

13:35 CEST

Break Remo+Slack

13:54 CEST

EMEA-APAC Session 9 Meeting HallSaskia Hiltemann

13:55 CEST

A single stack for dev, testing, and production: Galaxy Helm Chart v4 Meeting HallNuwan Goonasekera

14:13 CEST

Browser Development Environment for Galaxy Powered by Kubernetes Meeting HallAlexandru Mahmoud

14:19 CEST

Interactive Tools in Galaxy on Kubernetes Meeting HallAlexandru Mahmoud

14:25 CEST

An automatic tool installer with integrated testing for a public Galaxy Meeting HallCatherine Bromhead

14:31 CEST

Q&A Meeting Hall

14:40 CEST

Closing Meeting Hall

15:00 CEST

Break Remo+Slack

15:20 CEST

Birds of a Feather (BOFs) Galactic Cafe BoF: Community Hubs: Helping the Hubmakers Poster / Demo / Sponsor BuildingNick Stoler BoF: Galaxy community roadmap planning Galactic CafeRoss Lazarus BoF: Galaxy on Kubernetes Galactic CafeThe Other Enis Afgan • Alexandru Mahmoud • Nuwan Goonasekera • Keith Suderman BoF: GTN-Español - Bioinformatics resources in human-translated Spanish Galactic CafeBeatriz Serrano-Solano • Wendi Bacon BoF: IDC - Intergalactic (reference) Data Commission Galactic CafeLucille Delisle • Ignacio Eguinoa

16:20 CEST

Remo Reset Remo+Slack

16:30 CEST

Closing Social Galactic Cafe

03:00 CEST

GCC2021 CollaborationFest Galactic Cafe

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