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GCC2021 has ended
GCC2021 is governed by the VIB Conferences Code of Conduct.

The 2021 Galaxy Community Conference (GCC2021) is virtual and global, accessible in any time zone, on every continent, and in every country.  GCC2021 events are held twice, once in the original Ghent time zone (GCC EMEA+APAC), and again 9 hours later (GCC Americas).

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avatar for Matúš Kalas

Matúš Kalas

University of Bergen
Senior Engineer
Norway
Websitehttps://orcid.org/0000-0002-1509-4981
Contact Me
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Attending GCC2022 virtually 🌌

Working on open science|source|society|education, EDAM ontology, ELIXIR Norway, Bio.tools, ...

My Friends

  • avatar for Bérénice Batut
  • avatar for Michael R. Crusoe
  • avatar for Pratik Jagtap
  • avatar for Yvan Le Bras



Monday, June 28
 

00:00 CEST

GCC2021 Training Week: Galaxy for Scientists Track (Monday-Friday) Training Slack
 
Tuesday, July 6
 

09:01 CEST

Welcome Meeting HallFrederik Coppens

09:15 CEST

Enabling widespread use of Vertebrate Genome Project assembly pipeline by integration into Galaxy Meeting HallDelphine Lariviere • Alex Ostrovsky

09:33 CEST

Supporting the COVID-19 Data portal: viral data cleaning from human reads and submission to ENA Meeting HallIgnacio Eguinoa

09:39 CEST

Galaxy as a global platform for the analysis of SARS-CoV-2 sequence variants Meeting HallWolfgang Maier

09:57 CEST

CorGAT: a tool for the functional annotation of SARS-CoV-2 genomes Meeting HallErika Ferrandi

10:03 CEST

Easy access to NCBI data within Galaxy Meeting HallAdam Stine • Nuala O'Leary

10:35 CEST

Using Galaxy File Source Plugins to Work with Remote Data including Applications Meeting HallJohn Chilton • Luke Sargent

10:53 CEST

Overhaul and pagination in Data-Libraries Meeting HallOleg Zharkov

11:05 CEST

How UseGalaxy.EU is managed - tips and tricks from inside Meeting HallGianmauro Cuccuru

12:00 CEST

Tu-2.6: Easy access to NCBI data within Galaxy Poster / Demo / Sponsor HallAdam Stine • Nuala O'Leary Tu-2.7: Galaxy-E project: 2021 News Poster / Demo / Sponsor HallYvan Le Bras Tu-2.8: Janis for workflow translation – a potential benefit to the Galaxy ecosystem Poster / Demo / Sponsor HallRichard Lupat

13:25 CEST

Remo Reset Remo+Slack

13:46 CEST

Enhancing the Whole Workflow Experience from Development through Publication and to Execution Meeting HallJohn Chilton

14:04 CEST

Introducing the Intergalactic Workflow Commission Meeting HallMarius van den Beek

14:22 CEST

Publication of BioCompute Objects (IEEE-2791-2020) created from Galaxy workflow invocations Meeting HallCharles [Hadley] King

14:40 CEST

Developing Pro workflows: lessons learned Meeting HallRandy Guertin

14:46 CEST

The WorkflowHub - a registry for workflows Meeting HallIgnacio Eguinoa

15:20 CEST

BoF: Galaxy & Bioinformatics in Africa Galactic CafePeter van Heusden • Tracey Calvert-Joshua BoF: Galaxy for Microbiome - Kickoff Galactic CafeBérénice Batut • Saskia Hiltemann

16:30 CEST

Opening Social Galactic Cafe

21:00 CEST

Tu-2.7: Galaxy-E project: 2021 News Poster / Demo / Sponsor HallYvan Le Bras Tu-3.3: Practical aspects of implementing the IRIDA system as a solution for One Health bioinformatics analyses Poster / Demo / Sponsor HallJeevan Karloss Antony Samy

22:46 CEST

Enhancing the Whole Workflow Experience from Development through Publication and to Execution Meeting HallJohn Chilton

23:04 CEST

Introducing the Intergalactic Workflow Commission Meeting HallMarius van den Beek

23:22 CEST

Publication of BioCompute Objects (IEEE-2791-2020) created from Galaxy workflow invocations Meeting HallCharles [Hadley] King

23:46 CEST

The WorkflowHub - a registry for workflows Meeting HallIgnacio Eguinoa
 
Wednesday, July 7
 

12:00 CEST

W-3.8: EDAM ontology, tools, and community Poster / Demo / Sponsor HallHager Eldakroury • Melissa W-4.3: Galaxy and Research Lifecycle Management technologies for Earth Science Communities and Copernicus users in EOSC Poster / Demo / Sponsor HallAnne Fouilloux W-4.5: Gallantries: Scalable, Modular Bioinformatics Curricula Poster / Demo / Sponsor HallHelena Rasche W-4.8: GPU enabled Jupyterlab notebook for deep learning using Tensorflow in Galaxy Poster / Demo / Sponsor HallAnup Kumar W-4.9: Taxonomic Classification Analysis of Human Gut Microbiota Using Kraken 2 Poster / Demo / Sponsor HallNihan Sultan Milat

13:40 CEST

Galaxy Community Update Meeting HallRoss Lazarus • Helena Rasche • Saskia Hiltemann • Andrew Lonie • Bjorn Gruning • Anton Nekrutenko • Jeremy Goecks • The Other Enis Afgan • Daniel Blankenberg • Mike Schatz

17:00 CEST

BoF: Boost the diversity in your community: Outreachy and other internship-mentorship initiatives Galactic CafeMatúš Kalas • Hager Eldakroury • Melissa

18:10 CEST

Detection and functional annotation of lncRNA Meeting HallBianca Pasat

18:16 CEST

Automated Deployment of Genome Databases for Marine Brown Algae Using Galaxy Genome Annotation (GGA) Meeting HallLoraine Guéguen

18:22 CEST

Galaxy-ML: An Accessible, Reproducible, and Scalable Machine Learning Toolkit for Biomedicine Meeting HallKaivan Kamali

18:40 CEST

The immuneML Portal: a public Galaxy server for machine learning analysis of adaptive immune receptor repertoires Meeting HallLonneke Scheffer

18:46 CEST

The Galaxy Public Health Community Meeting HallPeter van Heusden

18:52 CEST

A flexible Galaxy-based platform for the analysis of microbial WGS data in public health Meeting HallBert Bogaerts

18:58 CEST

The “ARIES Genomics” Italian public health surveillance system Meeting HallArnold Knijn

19:04 CEST

Fostering Public Health Bioinformatics and Collaboration with GalaxyTrakr Meeting HallJustin Payne

19:40 CEST

Analysis of Microscopy Data in Galaxy Meeting HallBeatriz Serrano-Solano

19:46 CEST

Bridging Natural Language Processing and Biomedical Data Analysis Meeting HallNancy Ide

20:04 CEST

French EBV operationalization pilot, where Galaxy can help Biodiversity Meeting HallColine Royaux

20:10 CEST

Updates from the Single-Cell Community Meeting HallMehmet Tekman • Wendi Bacon

20:16 CEST

NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy Meeting HallWillem de Koning

20:22 CEST

Using custom Galaxy workflows to reproducibly search for bacteriophage spanin proteins reveals distinct population distributions Meeting HallJolene Ramsey

21:00 CEST

W-3.10: Detection and functional annotation of lncRNA Poster / Demo / Sponsor HallBianca Pasat W-3.11: GalaxyLab: A JupyterLab extension for interactive graphical and programmatic access to Galaxy Poster / Demo / Sponsor Halljayadev joshi W-3.7: A flexible Galaxy-based platform for the analysis of microbial WGS data in public health Poster / Demo / Sponsor HallBert Bogaerts W-3.8: EDAM ontology, tools, and community Poster / Demo / Sponsor HallHager Eldakroury • Melissa W-4.2: Driving workforce transition in Australian life science research Poster / Demo / Sponsor HallAnna Syme W-4.3: Galaxy and Research Lifecycle Management technologies for Earth Science Communities and Copernicus users in EOSC Poster / Demo / Sponsor HallAnne Fouilloux W-4.4: Publication of BioCompute Objects (IEEE-2791-2020) created from Galaxy workflow invocations Poster / Demo / Sponsor HallCharles [Hadley] King W-4.5: Gallantries: Scalable, Modular Bioinformatics Curricula Poster / Demo / Sponsor HallHelena Rasche W-4.7: The next-generation Galaxy community site Poster / Demo / Sponsor HallNick Stoler W-4.8: GPU enabled Jupyterlab notebook for deep learning using Tensorflow in Galaxy Poster / Demo / Sponsor HallAnup Kumar W-4.9: Taxonomic Classification Analysis of Human Gut Microbiota Using Kraken 2 Poster / Demo / Sponsor HallNihan Sultan Milat
 
Thursday, July 8
 

08:00 CEST

BoF: Galaxy & Training / Teaching Galactic CafeBjorn Gruning • Bérénice Batut • Helena Rasche • Saskia Hiltemann • Beatriz Serrano-Solano

09:10 CEST

Galaxy Training Network (GTN) Community Update Meeting HallHelena Rasche • Saskia Hiltemann

09:34 CEST

Open Life Science: An Open Research mentoring and training program Meeting HallMuhammet A. Celik

09:58 CEST

Community engagement and how it influences Galaxy Australia Innovation Meeting HallJohan Gustafsson

10:16 CEST

Q&A Meeting Hall

10:45 CEST

Quantitative Metaproteomics using Galaxy Platform: Measuring Functional Microbiome via Data-Dependent and Data-Independent Acquisition Mass Spec Meeting HallPratik Jagtap • Subina Mehta

11:21 CEST

MaxQuant and MSstats in Galaxy enable reproducible quantitative high-throughput proteomics for everyone Meeting HallMelanie Föll

11:27 CEST

Peptide mass spectrometry imaging of pancreatic cancers – A data analysis workflow in Galaxy Meeting HallMaren Stillger

11:39 CEST

Muon Galaxy – extending Galaxy for muon science Meeting HallEli Chadwick

11:45 CEST

Q&A Meeting Hall

12:15 CEST

Th-5.3: An automatic tool installer with integrated testing for a public Galaxy Poster / Demo / Sponsor HallCatherine Bromhead Th-5.4: ARIAWeb: a new web service for automated NMR structure calculation with ARIA Poster / Demo / Sponsor HallFabien Mareuil Th-5.6: Building a Disaster Recovery option for Galaxy Australia Poster / Demo / Sponsor HallNicholas Rhodes Th-5.7: Comparative genomic analysis of the pink pigmented facultative methylotrophs (PPFMs) Poster / Demo / Sponsor HallOla Alessa Th-6.2: Efficient Tool Development within Enterprise Poster / Demo / Sponsor HallPeter Selten Th-6.3: Galaxy Genome Annotation (GGA) environment in the cloud Poster / Demo / Sponsor HallRomain Dallet Th-6.4: From the landscape to the plant: Integrating, visualizing and analyzing plant environment, phenotype and genotype using CartograPlant, WildType and Tripal Galaxy Poster / Demo / Sponsor HallIrene Cobo-Simon Th-6.5: Galaxy GFF3 tool suite for manipulation, conversion and deposition of genome data Poster / Demo / Sponsor HallAnthony Criscione Th-6.6: MaxQuant and MSstats in Galaxy enable reproducible quantitative high-throughput proteomics for everyone Poster / Demo / Sponsor HallNiko Pinter Th-6.7: New User Welcome: A customizable, beginner-friendly introduction into Galaxy Poster / Demo / Sponsor HallAlex Ostrovsky Th-6.8: Peptide mass spectrometry imaging of pancreatic cancers – A data analysis workflow in Galaxy Poster / Demo / Sponsor HallMaren Stillger

13:55 CEST

A single stack for dev, testing, and production: Galaxy Helm Chart v4 Meeting HallNuwan Goonasekera

14:13 CEST

Browser Development Environment for Galaxy Powered by Kubernetes Meeting HallAlexandru Mahmoud

14:19 CEST

Interactive Tools in Galaxy on Kubernetes Meeting HallAlexandru Mahmoud

14:25 CEST

An automatic tool installer with integrated testing for a public Galaxy Meeting HallCatherine Bromhead

14:31 CEST

Q&A Meeting Hall

14:40 CEST

Closing Meeting Hall

16:30 CEST

Closing Social Galactic Cafe

18:28 CEST

Using the Galaxy (Australia) Database to Aid an Undergraduate Investigation of RNF43 Mutations as Biomarkers for ctDNA Surveillance of Colorectal Cancer Meeting HallJordon Lima

18:34 CEST

Open Life Science: An Open Research mentoring and training program Meeting HallMuhammet A. Celik

18:40 CEST

Galaxy Australia - the influx state of a national eResearch service Meeting HallSimon Gladman • Gareth Price

19:45 CEST

Quantitative Metaproteomics using Galaxy Platform: Measuring Functional Microbiome via Data-Dependent and Data-Independent Acquisition Mass Spec Meeting HallPratik Jagtap • Subina Mehta

20:03 CEST

A Galaxy-based evaluation of optimal peptide targets for MS-based detection of SARS-CoV-2 in clinical samples Meeting HallAndrew T. Rajczewski

20:21 CEST

MaxQuant and MSstats in Galaxy enable reproducible quantitative high-throughput proteomics for everyone Meeting HallMelanie Föll

20:27 CEST

Peptide mass spectrometry imaging of pancreatic cancers – A data analysis workflow in Galaxy Meeting HallMaren Stillger

20:33 CEST

XIMG-CHESS: a Galaxy based Science Gateway for X-ray Diffraction Imaging and Microstructure Modeling Meeting HallJorge Vinals

20:39 CEST

Muon Galaxy – extending Galaxy for muon science Meeting HallEli Chadwick

20:45 CEST

Q&A Meeting Hall

21:15 CEST

F1000Research Poster / Demo / Sponsor HallDemitra Ellina Th-5.2: Addressing the demand for secure and scalable on-demand Galaxy platforms Poster / Demo / Sponsor HallThe Other Enis Afgan Th-5.5: Augmenting Galaxy with GPU Support for Speeding Up Scientific Applications Poster / Demo / Sponsor HallGulsum Gudukbay Th-5.8: CloudForest: Dockerized Galaxy as a Platform for an Integrated Phylogenomics Software Workflow Poster / Demo / Sponsor HallReid Wagner Th-6.4: From the landscape to the plant: Integrating, visualizing and analyzing plant environment, phenotype and genotype using CartograPlant, WildType and Tripal Galaxy Poster / Demo / Sponsor HallIrene Cobo-Simon Th-6.7: New User Welcome: A customizable, beginner-friendly introduction into Galaxy Poster / Demo / Sponsor HallAlex Ostrovsky

23:40 CEST

Closing Meeting Hall
 
Friday, July 9
 

00:20 CEST

BoF: Earth in Galaxy: handling georeferenced data in Galaxy Galactic CafeMatúš Kalas • Melissa

03:00 CEST

GCC2021 CollaborationFest Galactic Cafe
 
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