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GCC2021 is governed by the VIB Conferences Code of Conduct.

The 2021 Galaxy Community Conference (GCC2021) is virtual and global, accessible in any time zone, on every continent, and in every country.  GCC2021 events are held twice, once in the original Ghent time zone (GCC EMEA+APAC), and again 9 hours later (GCC Americas).

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avatar for James Johnson (JJ)

James Johnson (JJ)

Minnesota Supercomputing Institute, University of Minnesota
Senior Software Developer
University of Minnesota
Galaxy for genomics and proteomics
Tuesday, July 6
 

13:39 CEST

EMEA-APAC Session 3 Meeting HallJennifer Harrow

13:40 CEST

A Galaxy-based multi-omic workflow for discovery and validation of candidate neoantigen peptides for immuno-oncology Meeting HallTimothy J. Griffin

13:46 CEST

Enhancing the Whole Workflow Experience from Development through Publication and to Execution Meeting HallJohn Chilton

14:04 CEST

Introducing the Intergalactic Workflow Commission Meeting HallMarius van den Beek

14:22 CEST

Publication of BioCompute Objects (IEEE-2791-2020) created from Galaxy workflow invocations Meeting HallCharles [Hadley] King

14:40 CEST

Developing Pro workflows: lessons learned Meeting HallRandy Guertin

14:46 CEST

The WorkflowHub - a registry for workflows Meeting HallIgnacio Eguinoa

15:19 CEST

Americas Conference Day 1 Remo+Slack

16:30 CEST

Opening Social Galactic Cafe

18:00 CEST

Americas Session 1 Meeting HallFrederik Coppens

18:01 CEST

Welcome Meeting HallFrederik Coppens

18:15 CEST

Enabling widespread use of Vertebrate Genome Project assembly pipeline by integration into Galaxy Meeting HallDelphine Lariviere • Alex Ostrovsky

18:33 CEST

Supporting the COVID-19 Data portal: viral data cleaning from human reads and submission to ENA Meeting HallIgnacio Eguinoa

18:39 CEST

Galaxy as a global platform for the analysis of SARS-CoV-2 sequence variants Meeting HallWolfgang Maier

18:57 CEST

CorGAT: a tool for the functional annotation of SARS-CoV-2 genomes Meeting HallErika Ferrandi

19:03 CEST

Easy access to NCBI data within Galaxy Meeting HallAdam Stine • Nuala O'Leary

19:34 CEST

Americas Session 2 Meeting HallNate Coraor

19:35 CEST

Using Galaxy File Source Plugins to Work with Remote Data including Applications Meeting HallLuke Sargent • John Chilton

19:53 CEST

Overhaul and pagination in Data-Libraries Meeting HallOleg Zharkov

19:59 CEST

Recent updates to Nebulizer: a command line utility for Galaxy admins Meeting HallPeter Briggs

20:05 CEST

How UseGalaxy.EU is managed - tips and tricks from inside Meeting HallGianmauro Cuccuru

20:23 CEST

HPC back-end runner for massive SARS-CoV-2 samples processing Meeting HallHugo Jiménez Hernández

20:29 CEST

Laniakea - Update 2021 Meeting HallMarco Antonio Tangaro

20:59 CEST

Americas Tuesday Poster / Demo / Sponsor Session Poster / Demo / Sponsor Hall

21:00 CEST

Tu-2.2: Automating Galaxy tool requirement updates with Planemo Poster / Demo / Sponsor HallSimon Bray Tu-2.3: ComPIL 2.0 and MetaNovo Tools for Metaproteomics Searches Within Galaxy: Searching for Needles in a Haystack Poster / Demo / Sponsor HallReid Wagner Tu-2.5: Galaxy as a global platform for the analysis of SARS-CoV-2 sequence variants Poster / Demo / Sponsor HallWolfgang Maier Tu-3.2: Genome-wide predictions and structural modeling of protein-protein interactions using Galaxy Poster / Demo / Sponsor HallAysam Guerler
 
Wednesday, July 7
 

15:20 CEST

BoF: Celestial Masses: Galaxy Platform for Mass Spectrometry Research Galactic CafePratik Jagtap • Melanie Föll

17:00 CEST

BoF: At the edge of the Galaxy, the lonely life of a (small scale) local Galaxy server admin Galactic CafeHans-Rudolf Hotz • Lucille Delisle

18:01 CEST

Welcome Meeting HallJeremy Goecks

18:10 CEST

Detection and functional annotation of lncRNA Meeting HallBianca Pasat

18:16 CEST

Automated Deployment of Genome Databases for Marine Brown Algae Using Galaxy Genome Annotation (GGA) Meeting HallLoraine Guéguen

18:22 CEST

Galaxy-ML: An Accessible, Reproducible, and Scalable Machine Learning Toolkit for Biomedicine Meeting HallKaivan Kamali

18:40 CEST

The immuneML Portal: a public Galaxy server for machine learning analysis of adaptive immune receptor repertoires Meeting HallLonneke Scheffer

18:46 CEST

The Galaxy Public Health Community Meeting HallPeter van Heusden

18:52 CEST

A flexible Galaxy-based platform for the analysis of microbial WGS data in public health Meeting HallBert Bogaerts

18:58 CEST

The “ARIES Genomics” Italian public health surveillance system Meeting HallArnold Knijn

19:04 CEST

Fostering Public Health Bioinformatics and Collaboration with GalaxyTrakr Meeting HallJustin Payne

19:10 CEST

Q&A Meeting Hall

22:39 CEST

Americas Session 6 Meeting HallBrad Langhorst

22:40 CEST

Galaxy Community Update Meeting HallRoss Lazarus • Helena Rasche • Saskia Hiltemann • Andrew Lonie • Bjorn Gruning • Anton Nekrutenko • Jeremy Goecks • The Other Enis Afgan • Daniel Blankenberg • Mike Schatz
 
Thursday, July 8
 

14:40 CEST

Closing Meeting Hall

16:30 CEST

Closing Social Galactic Cafe

19:44 CEST

Americas Session 8 Meeting HallPratik Jagtap

19:45 CEST

Quantitative Metaproteomics using Galaxy Platform: Measuring Functional Microbiome via Data-Dependent and Data-Independent Acquisition Mass Spec Meeting HallPratik Jagtap • Subina Mehta

20:03 CEST

A Galaxy-based evaluation of optimal peptide targets for MS-based detection of SARS-CoV-2 in clinical samples Meeting HallAndrew T. Rajczewski

20:21 CEST

MaxQuant and MSstats in Galaxy enable reproducible quantitative high-throughput proteomics for everyone Meeting HallMelanie Föll

20:27 CEST

Peptide mass spectrometry imaging of pancreatic cancers – A data analysis workflow in Galaxy Meeting HallMaren Stillger

20:33 CEST

XIMG-CHESS: a Galaxy based Science Gateway for X-ray Diffraction Imaging and Microstructure Modeling Meeting HallJorge Vinals

20:39 CEST

Muon Galaxy – extending Galaxy for muon science Meeting HallEli Chadwick

21:15 CEST

Th-5.8: CloudForest: Dockerized Galaxy as a Platform for an Integrated Phylogenomics Software Workflow Poster / Demo / Sponsor HallReid Wagner

23:40 CEST

Closing Meeting Hall
 
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