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GCC2021 has ended
GCC2021 is governed by the VIB Conferences Code of Conduct.

The 2021 Galaxy Community Conference (GCC2021) is virtual and global, accessible in any time zone, on every continent, and in every country.  GCC2021 events are held twice, once in the original Ghent time zone (GCC EMEA+APAC), and again 9 hours later (GCC Americas).

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Zone: Americas [clear filter]
Monday, June 28
 

00:00 CEST

GCC2021 Training Week: Galaxy for Administrators Track (Monday-Friday) Training Slack GCC2021 Training Week: Galaxy for Developers Track (Monday-Friday) Training Slack GCC2021 Training Week: Galaxy for Scientists Track (Monday-Friday) Training Slack
 
Tuesday, June 29
 

00:00 CEST

GCC2021 Training Week: Galaxy for Administrators Track (Monday-Friday) Training Slack GCC2021 Training Week: Galaxy for Developers Track (Monday-Friday) Training Slack GCC2021 Training Week: Galaxy for Scientists Track (Monday-Friday) Training Slack
 
Wednesday, June 30
 

00:00 CEST

GCC2021 Training Week: Galaxy for Administrators Track (Monday-Friday) Training Slack GCC2021 Training Week: Galaxy for Developers Track (Monday-Friday) Training Slack GCC2021 Training Week: Galaxy for Scientists Track (Monday-Friday) Training Slack
 
Thursday, July 1
 

00:00 CEST

GCC2021 Training Week: Galaxy for Administrators Track (Monday-Friday) Training Slack GCC2021 Training Week: Galaxy for Developers Track (Monday-Friday) Training Slack GCC2021 Training Week: Galaxy for Scientists Track (Monday-Friday) Training Slack

18:00 CEST

Open House Galactic Cafe
 
Friday, July 2
 

00:00 CEST

GCC2021 Training Week: Galaxy for Administrators Track (Monday-Friday) Training Slack GCC2021 Training Week: Galaxy for Developers Track (Monday-Friday) Training Slack GCC2021 Training Week: Galaxy for Scientists Track (Monday-Friday) Training Slack

18:00 CEST

Open House Social Building
 
Monday, July 5
 

01:00 CEST

Open House! Meeting Hall
 
Tuesday, July 6
 

15:19 CEST

Americas Conference Day 1 Remo+Slack

15:20 CEST

Birds of a Feather (BOFs) Galactic Cafe BoF: Galaxy & Bioinformatics in Africa Galactic CafePeter van Heusden • Tracey Calvert-Joshua BoF: Galaxy for Microbiome - Kickoff Galactic CafeBérénice Batut • Saskia Hiltemann

16:30 CEST

Opening Social Galactic Cafe

17:45 CEST

Remo Reset Remo+Slack

18:00 CEST

Americas Session 1 Meeting HallFrederik Coppens

18:01 CEST

Welcome Meeting HallFrederik Coppens

18:15 CEST

Enabling widespread use of Vertebrate Genome Project assembly pipeline by integration into Galaxy Meeting HallDelphine Lariviere • Alex Ostrovsky

18:33 CEST

Supporting the COVID-19 Data portal: viral data cleaning from human reads and submission to ENA Meeting HallIgnacio Eguinoa

18:39 CEST

Galaxy as a global platform for the analysis of SARS-CoV-2 sequence variants Meeting HallWolfgang Maier

18:57 CEST

CorGAT: a tool for the functional annotation of SARS-CoV-2 genomes Meeting HallErika Ferrandi

19:03 CEST

Easy access to NCBI data within Galaxy Meeting HallAdam Stine • Nuala O'Leary

19:09 CEST

Q&A Meeting Hall

19:15 CEST

Break Remo+Slack

19:34 CEST

Americas Session 2 Meeting HallNate Coraor

19:35 CEST

Using Galaxy File Source Plugins to Work with Remote Data including Applications Meeting HallLuke Sargent • John Chilton

19:53 CEST

Overhaul and pagination in Data-Libraries Meeting HallOleg Zharkov

19:59 CEST

Recent updates to Nebulizer: a command line utility for Galaxy admins Meeting HallPeter Briggs

20:05 CEST

How UseGalaxy.EU is managed - tips and tricks from inside Meeting HallGianmauro Cuccuru

20:23 CEST

HPC back-end runner for massive SARS-CoV-2 samples processing Meeting HallHugo Jiménez Hernández

20:29 CEST

Laniakea - Update 2021 Meeting HallMarco Antonio Tangaro

20:35 CEST

Q&A Meeting Hall

20:40 CEST

Break Remo+Slack

20:59 CEST

Americas Tuesday Poster / Demo / Sponsor Session Poster / Demo / Sponsor Hall

21:00 CEST

F1000Research Poster / Demo / Sponsor HallDemitra Ellina Tu-2.10: Laniakea@ReCaS: first year of activity of a Laniakea-based Galaxy “on-demand” service Poster / Demo / Sponsor Hallpietro mandreoli Tu-2.2: Automating Galaxy tool requirement updates with Planemo Poster / Demo / Sponsor HallSimon Bray Tu-2.3: ComPIL 2.0 and MetaNovo Tools for Metaproteomics Searches Within Galaxy: Searching for Needles in a Haystack Poster / Demo / Sponsor HallReid Wagner Tu-2.4: Diversity of pleurocidin-like antimicrobial peptides in a marine bony fish (Sparus aurata) by re-identification in ESTs Poster / Demo / Sponsor HallJhon Alberto Serna Duque Tu-2.5: Galaxy as a global platform for the analysis of SARS-CoV-2 sequence variants Poster / Demo / Sponsor HallWolfgang Maier Tu-2.6: Easy access to NCBI data within Galaxy Poster / Demo / Sponsor HallAdam Stine • Nuala O'Leary Tu-2.7: Galaxy-E project: 2021 News Poster / Demo / Sponsor HallYvan Le Bras Tu-2.8: Janis for workflow translation – a potential benefit to the Galaxy ecosystem Poster / Demo / Sponsor HallRichard Lupat Tu-2.9: Enabling widespread use of Vertebrate Genome Project assembly pipeline by integration into Galaxy Poster / Demo / Sponsor HallDelphine Lariviere • Alex Ostrovsky Tu-3.2: Genome-wide predictions and structural modeling of protein-protein interactions using Galaxy Poster / Demo / Sponsor HallAysam Guerler Tu-3.3: Practical aspects of implementing the IRIDA system as a solution for One Health bioinformatics analyses Poster / Demo / Sponsor HallJeevan Karloss Antony Samy Tu-3.4: Recent updates to Nebulizer: a command line utility for Galaxy admins Poster / Demo / Sponsor HallPeter Briggs Tu-3.5: Streamlining accessibility and computability of large-scale genomic datasets with the NHGRI genome data science Analysis, Visualization, and Informatics Lab-Space (ANVIL) Poster / Demo / Sponsor HallStephen Mosher Tu-3.6: Use of Galaxy tools for microbiome analysis of breast cancer RNA-seq transcriptomic data Poster / Demo / Sponsor HallDominik Hadzega

22:20 CEST

Break Remo+Slack

22:25 CEST

Remo Reset Remo+Slack

22:39 CEST

Americas Session 3 Meeting HallSubina Mehta

22:40 CEST

A Galaxy-based multi-omic workflow for discovery and validation of candidate neoantigen peptides for immuno-oncology Meeting HallTimothy J. Griffin

22:46 CEST

Enhancing the Whole Workflow Experience from Development through Publication and to Execution Meeting HallJohn Chilton

23:04 CEST

Introducing the Intergalactic Workflow Commission Meeting HallMarius van den Beek

23:22 CEST

Publication of BioCompute Objects (IEEE-2791-2020) created from Galaxy workflow invocations Meeting HallCharles [Hadley] King

23:40 CEST

Developing Pro workflows: lessons learned Meeting HallRandy Guertin

23:46 CEST

The WorkflowHub - a registry for workflows Meeting HallIgnacio Eguinoa

23:52 CEST

Q&A Meeting Hall
 
Wednesday, July 7
 

00:00 CEST

Break Remo+Slack

00:20 CEST

Birds of a Feather (BOFs) Galactic Cafe

08:00 CEST

Birds of a Feather (BOFs) Galactic Cafe

15:19 CEST

Americas Conference Day 2 Remo+Slack

15:20 CEST

Birds of a Feather (BOFs) Galactic Cafe BoF: Celestial Masses: Galaxy Platform for Mass Spectrometry Research Galactic CafePratik Jagtap • Melanie Föll BoF: Galaxy Public Health Community Galactic CafePeter van Heusden • Karin Lagesen • Arnold Knijn

16:45 CEST

Remo Reset Remo+Slack

17:00 CEST

Birds of a Feather (BOFs) Galactic Cafe BoF: Accessing NCBI Data in Galaxy Galactic CafeAdelaide Rhodes • Eric Cox • Nuala O'Leary BoF: At the edge of the Galaxy, the lonely life of a (small scale) local Galaxy server admin Galactic CafeHans-Rudolf Hotz • Lucille Delisle BoF: Boost the diversity in your community: Outreachy and other internship-mentorship initiatives Galactic CafeMatúš Kalas • Hager Eldakroury • Melissa

18:00 CEST

Americas Session 4 Meeting HallJeremy Goecks

18:01 CEST

Welcome Meeting HallJeremy Goecks

18:10 CEST

Detection and functional annotation of lncRNA Meeting HallBianca Pasat

18:16 CEST

Automated Deployment of Genome Databases for Marine Brown Algae Using Galaxy Genome Annotation (GGA) Meeting HallLoraine Guéguen

18:22 CEST

Galaxy-ML: An Accessible, Reproducible, and Scalable Machine Learning Toolkit for Biomedicine Meeting HallKaivan Kamali

18:40 CEST

The immuneML Portal: a public Galaxy server for machine learning analysis of adaptive immune receptor repertoires Meeting HallLonneke Scheffer

18:46 CEST

The Galaxy Public Health Community Meeting HallPeter van Heusden

18:52 CEST

A flexible Galaxy-based platform for the analysis of microbial WGS data in public health Meeting HallBert Bogaerts

18:58 CEST

The “ARIES Genomics” Italian public health surveillance system Meeting HallArnold Knijn

19:04 CEST

Fostering Public Health Bioinformatics and Collaboration with GalaxyTrakr Meeting HallJustin Payne

19:10 CEST

Q&A Meeting Hall

19:20 CEST

Break Remo+Slack

19:39 CEST

Americas Session 5 Meeting HallAnne Fouilloux

19:40 CEST

Analysis of Microscopy Data in Galaxy Meeting HallBeatriz Serrano-Solano

19:46 CEST

Bridging Natural Language Processing and Biomedical Data Analysis Meeting HallNancy Ide

20:04 CEST

French EBV operationalization pilot, where Galaxy can help Biodiversity Meeting HallColine Royaux

20:10 CEST

Updates from the Single-Cell Community Meeting HallMehmet Tekman • Wendi Bacon

20:16 CEST

NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy Meeting HallWillem de Koning

20:22 CEST

Using custom Galaxy workflows to reproducibly search for bacteriophage spanin proteins reveals distinct population distributions Meeting HallJolene Ramsey

20:28 CEST

Q&A Meeting Hall

20:40 CEST

Break Remo+Slack

20:45 CEST

Remo Reset Remo+Slack

20:59 CEST

Americas Wednesday Poster / Demo / Sponsor Session Poster / Demo / Sponsor Hall

21:00 CEST

F1000Research Poster / Demo / Sponsor HallDemitra Ellina W-3.10: Detection and functional annotation of lncRNA Poster / Demo / Sponsor HallBianca Pasat W-3.11: GalaxyLab: A JupyterLab extension for interactive graphical and programmatic access to Galaxy Poster / Demo / Sponsor Halljayadev joshi W-3.7: A flexible Galaxy-based platform for the analysis of microbial WGS data in public health Poster / Demo / Sponsor HallBert Bogaerts W-3.8: EDAM ontology, tools, and community Poster / Demo / Sponsor HallHager Eldakroury • Melissa W-3.9: Automated Deployment of Genome Databases for Marine Brown Algae Using Galaxy Genome Annotation (GGA) Poster / Demo / Sponsor HallLoraine Guéguen • Arthur Le Bars W-4.10: Using custom Galaxy workflows to reproducibly search for bacteriophage spanin proteins reveals distinct population distributions Poster / Demo / Sponsor HallJolene Ramsey W-4.11: The “ARIES Genomics” Italian public health surveillance system Poster / Demo / Sponsor HallArnold Knijn W-4.2: Driving workforce transition in Australian life science research Poster / Demo / Sponsor HallAnna Syme W-4.3: Galaxy and Research Lifecycle Management technologies for Earth Science Communities and Copernicus users in EOSC Poster / Demo / Sponsor HallAnne Fouilloux W-4.4: Publication of BioCompute Objects (IEEE-2791-2020) created from Galaxy workflow invocations Poster / Demo / Sponsor HallCharles [Hadley] King W-4.5: Gallantries: Scalable, Modular Bioinformatics Curricula Poster / Demo / Sponsor HallHelena Rasche W-4.7: The next-generation Galaxy community site Poster / Demo / Sponsor HallNick Stoler W-4.8: GPU enabled Jupyterlab notebook for deep learning using Tensorflow in Galaxy Poster / Demo / Sponsor HallAnup Kumar W-4.9: Taxonomic Classification Analysis of Human Gut Microbiota Using Kraken 2 Poster / Demo / Sponsor HallNihan Sultan Milat

22:20 CEST

Break Remo+Slack

22:39 CEST

Americas Session 6 Meeting HallBrad Langhorst

22:40 CEST

Galaxy Community Update Meeting HallRoss Lazarus • Helena Rasche • Saskia Hiltemann • Andrew Lonie • Bjorn Gruning • Anton Nekrutenko • Jeremy Goecks • The Other Enis Afgan • Daniel Blankenberg • Mike Schatz

23:05 CEST

Modernizing the Galaxy Backend - Data Model Meeting HallThat Other Person

23:11 CEST

Modernizing the Galaxy Backend - Typing and the API Meeting HallDavid López

23:17 CEST

Modernizing the Galaxy Backend - Typing and Dependency Injection Meeting HallJohn Chilton

23:23 CEST

Modernizing the Galaxy Backend - A Task Framework Meeting HallDannon Baker

23:29 CEST

Galaxy for Protected Datasets Meeting HallThe Other Enis Afgan

23:35 CEST

Galaxy Language Server - Develop high-quality Galaxy tool wrappers at intergalactic speed Meeting HallDavid López

23:41 CEST

Galaxy CloudStor Integration - linking national resources for secure data transfer between services Meeting HallGareth Price

23:47 CEST

Q&A Meeting Hall
 
Thursday, July 8
 

00:00 CEST

Break Remo+Slack

00:10 CEST

Remo Reset Remo+Slack

00:20 CEST

Birds of a Feather (BOFs) Galactic Cafe BoF: Galaxy community roadmap planning Galactic CafeRoss Lazarus

08:00 CEST

Birds of a Feather (BOFs) Galactic Cafe

15:19 CEST

Americas Conference Day 3 Remo+Slack

15:20 CEST

Birds of a Feather (BOFs) Galactic Cafe BoF: Community Hubs: Helping the Hubmakers Poster / Demo / Sponsor BuildingNick Stoler BoF: Galaxy community roadmap planning Galactic CafeRoss Lazarus BoF: Galaxy on Kubernetes Galactic CafeThe Other Enis Afgan • Alexandru Mahmoud • Nuwan Goonasekera • Keith Suderman BoF: GTN-Español - Bioinformatics resources in human-translated Spanish Galactic CafeBeatriz Serrano-Solano • Wendi Bacon BoF: IDC - Intergalactic (reference) Data Commission Galactic CafeLucille Delisle • Ignacio Eguinoa

16:20 CEST

Remo Reset Remo+Slack

16:30 CEST

Closing Social Galactic Cafe

18:00 CEST

Americas Session 7 Meeting HallBeatriz Serrano-Solano

18:01 CEST

Welcome Meeting HallBeatriz Serrano-Solano

18:10 CEST

Galaxy Training Network (GTN) Community Update Meeting HallHelena Rasche • Saskia Hiltemann

18:28 CEST

Using the Galaxy (Australia) Database to Aid an Undergraduate Investigation of RNF43 Mutations as Biomarkers for ctDNA Surveillance of Colorectal Cancer Meeting HallJordon Lima

18:34 CEST

Open Life Science: An Open Research mentoring and training program Meeting HallMuhammet A. Celik

18:40 CEST

Galaxy Australia - the influx state of a national eResearch service Meeting HallSimon Gladman • Gareth Price

18:58 CEST

Community engagement and how it influences Galaxy Australia Innovation Meeting HallJohan Gustafsson

19:16 CEST

Q&A Meeting Hall

19:25 CEST

Break Remo+Slack

19:44 CEST

Americas Session 8 Meeting HallPratik Jagtap

19:45 CEST

Quantitative Metaproteomics using Galaxy Platform: Measuring Functional Microbiome via Data-Dependent and Data-Independent Acquisition Mass Spec Meeting HallPratik Jagtap • Subina Mehta

20:03 CEST

A Galaxy-based evaluation of optimal peptide targets for MS-based detection of SARS-CoV-2 in clinical samples Meeting HallAndrew T. Rajczewski

20:21 CEST

MaxQuant and MSstats in Galaxy enable reproducible quantitative high-throughput proteomics for everyone Meeting HallMelanie Föll

20:27 CEST

Peptide mass spectrometry imaging of pancreatic cancers – A data analysis workflow in Galaxy Meeting HallMaren Stillger

20:33 CEST

XIMG-CHESS: a Galaxy based Science Gateway for X-ray Diffraction Imaging and Microstructure Modeling Meeting HallJorge Vinals

20:39 CEST

Muon Galaxy – extending Galaxy for muon science Meeting HallEli Chadwick

20:45 CEST

Q&A Meeting Hall

20:55 CEST

Break Remo+Slack

21:05 CEST

Remo Reset Remo+Slack

21:14 CEST

Americas Thursday Poster / Demo / Sponsor Session Poster / Demo / Sponsor Hall

21:15 CEST

F1000Research Poster / Demo / Sponsor HallDemitra Ellina Th-5.2: Addressing the demand for secure and scalable on-demand Galaxy platforms Poster / Demo / Sponsor HallThe Other Enis Afgan Th-5.3: An automatic tool installer with integrated testing for a public Galaxy Poster / Demo / Sponsor HallCatherine Bromhead Th-5.4: ARIAWeb: a new web service for automated NMR structure calculation with ARIA Poster / Demo / Sponsor HallFabien Mareuil Th-5.5: Augmenting Galaxy with GPU Support for Speeding Up Scientific Applications Poster / Demo / Sponsor HallGulsum Gudukbay Th-5.6: Building a Disaster Recovery option for Galaxy Australia Poster / Demo / Sponsor HallNicholas Rhodes Th-5.7: Comparative genomic analysis of the pink pigmented facultative methylotrophs (PPFMs) Poster / Demo / Sponsor HallOla Alessa Th-5.8: CloudForest: Dockerized Galaxy as a Platform for an Integrated Phylogenomics Software Workflow Poster / Demo / Sponsor HallReid Wagner Th-6.2: Efficient Tool Development within Enterprise Poster / Demo / Sponsor HallPeter Selten Th-6.3: Galaxy Genome Annotation (GGA) environment in the cloud Poster / Demo / Sponsor HallRomain Dallet Th-6.4: From the landscape to the plant: Integrating, visualizing and analyzing plant environment, phenotype and genotype using CartograPlant, WildType and Tripal Galaxy Poster / Demo / Sponsor HallIrene Cobo-Simon Th-6.5: Galaxy GFF3 tool suite for manipulation, conversion and deposition of genome data Poster / Demo / Sponsor HallAnthony Criscione Th-6.6: MaxQuant and MSstats in Galaxy enable reproducible quantitative high-throughput proteomics for everyone Poster / Demo / Sponsor HallNiko Pinter Th-6.7: New User Welcome: A customizable, beginner-friendly introduction into Galaxy Poster / Demo / Sponsor HallAlex Ostrovsky Th-6.8: Peptide mass spectrometry imaging of pancreatic cancers – A data analysis workflow in Galaxy Poster / Demo / Sponsor HallMaren Stillger

22:35 CEST

Break Remo+Slack

22:54 CEST

Americas Session 9 Meeting HallDaniel Blankenberg

22:55 CEST

A single stack for dev, testing, and production: Galaxy Helm Chart v4 Meeting HallNuwan Goonasekera

23:13 CEST

Browser Development Environment for Galaxy Powered by Kubernetes Meeting HallAlexandru Mahmoud

23:19 CEST

Interactive Tools in Galaxy on Kubernetes Meeting HallAlexandru Mahmoud

23:25 CEST

An automatic tool installer with integrated testing for a public Galaxy Meeting HallCatherine Bromhead

23:31 CEST

Q&A Meeting Hall

23:40 CEST

Closing Meeting Hall
 
Friday, July 9
 

00:00 CEST

Break Remo+Slack

00:10 CEST

Remo Reset Remo+Slack

00:20 CEST

BoF: Earth in Galaxy: handling georeferenced data in Galaxy Galactic CafeMatúš Kalas • Melissa BoF: Galaxy on Kubernetes Galactic CafeThe Other Enis Afgan • Alexandru Mahmoud • Nuwan Goonasekera • Keith Suderman

03:00 CEST

GCC2021 CollaborationFest Galactic Cafe
 
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