GCC2021 has ended

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GCC2021

GCC2021 is governed by the VIB Conferences Code of Conduct.

The 2021 Galaxy Community Conference (GCC2021) is virtual and global, accessible in any time zone, on every continent, and in every country. GCC2021 events are held twice, once in the original Ghent time zone (GCC EMEA+APAC), and again 9 hours later (GCC Americas).

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00:00 CEST

Break Remo+Slack

00:20 CEST

Birds of a Feather (BOFs) Galactic Cafe

07:59 CEST

EMEA-APAC Conference Day 2 Remo+Slack

08:00 CEST

Birds of a Feather (BOFs) Galactic Cafe BoF: Addressing common misconceptions about Galaxy Galactic CafeHans-Rudolf Hotz BoF: Namaste, Galaxy India! Galactic CafeAnshu Bhardwaj • Kiran K Telukunta • Prashanth Suravajhala • Harpreet Singh • Kirtan Dave BoF: Rainbow Galaxy People (LGBTQIA) Galactic CafeMichael R. Crusoe • Helena Rasche

09:00 CEST

EMEA-APAC Session 4 Meeting HallPeter van Heusden

09:01 CEST

Welcome Meeting HallPeter van Heusden

09:10 CEST

Detection and functional annotation of lncRNA Meeting HallBianca Pasat

09:16 CEST

Automated Deployment of Genome Databases for Marine Brown Algae Using Galaxy Genome Annotation (GGA) Meeting HallLoraine Guéguen

09:22 CEST

Galaxy-ML: An Accessible, Reproducible, and Scalable Machine Learning Toolkit for Biomedicine Meeting HallKaivan Kamali

09:40 CEST

The immuneML Portal: a public Galaxy server for machine learning analysis of adaptive immune receptor repertoires Meeting HallLonneke Scheffer

09:46 CEST

The Galaxy Public Health Community Meeting HallPeter van Heusden

09:52 CEST

A flexible Galaxy-based platform for the analysis of microbial WGS data in public health Meeting HallBert Bogaerts

09:58 CEST

The “ARIES Genomics” Italian public health surveillance system Meeting HallArnold Knijn

10:04 CEST

Fostering Public Health Bioinformatics and Collaboration with GalaxyTrakr Meeting HallJustin Payne

10:10 CEST

Q&A Meeting Hall

10:20 CEST

Break Remo+Slack

10:39 CEST

EMEA-APAC Session 5 Meeting HallMaria Doyle

10:40 CEST

Analysis of Microscopy Data in Galaxy Meeting HallBeatriz Serrano-Solano

10:46 CEST

Bridging Natural Language Processing and Biomedical Data Analysis Meeting HallNancy Ide

11:04 CEST

French EBV operationalization pilot, where Galaxy can help Biodiversity Meeting HallColine Royaux

11:10 CEST

Updates from the Single-Cell Community Meeting HallMehmet Tekman • Wendi Bacon

11:16 CEST

NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy Meeting HallWillem de Koning

11:22 CEST

Using custom Galaxy workflows to reproducibly search for bacteriophage spanin proteins reveals distinct population distributions Meeting HallJolene Ramsey

11:28 CEST

Q&A Meeting Hall

11:40 CEST

Break Remo+Slack

11:45 CEST

Remo Reset Remo+Slack

11:59 CEST

EMEA-APAC Wednesday Poster / Demo / Sponsor Session Poster / Demo / Sponsor Hall

12:00 CEST

W-4.3: Galaxy and Research Lifecycle Management technologies for Earth Science Communities and Copernicus users in EOSC Poster / Demo / Sponsor HallAnne Fouilloux F1000Research Poster / Demo / Sponsor HallDemitra Ellina W-3.10: Detection and functional annotation of lncRNA Poster / Demo / Sponsor HallBianca Pasat W-3.11: GalaxyLab: A JupyterLab extension for interactive graphical and programmatic access to Galaxy Poster / Demo / Sponsor Halljayadev joshi W-3.7: A flexible Galaxy-based platform for the analysis of microbial WGS data in public health Poster / Demo / Sponsor HallBert Bogaerts W-3.8: EDAM ontology, tools, and community Poster / Demo / Sponsor HallHager Eldakroury • Melissa W-3.9: Automated Deployment of Genome Databases for Marine Brown Algae Using Galaxy Genome Annotation (GGA) Poster / Demo / Sponsor HallLoraine Guéguen • Arthur Le Bars W-4.10: Using custom Galaxy workflows to reproducibly search for bacteriophage spanin proteins reveals distinct population distributions Poster / Demo / Sponsor HallJolene Ramsey W-4.11: The “ARIES Genomics” Italian public health surveillance system Poster / Demo / Sponsor HallArnold Knijn W-4.2: Driving workforce transition in Australian life science research Poster / Demo / Sponsor HallAnna Syme W-4.4: Publication of BioCompute Objects (IEEE-2791-2020) created from Galaxy workflow invocations Poster / Demo / Sponsor HallCharles [Hadley] King W-4.5: Gallantries: Scalable, Modular Bioinformatics Curricula Poster / Demo / Sponsor HallHelena Rasche W-4.7: The next-generation Galaxy community site Poster / Demo / Sponsor HallNick Stoler W-4.8: GPU enabled Jupyterlab notebook for deep learning using Tensorflow in Galaxy Poster / Demo / Sponsor HallAnup Kumar W-4.9: Taxonomic Classification Analysis of Human Gut Microbiota Using Kraken 2 Poster / Demo / Sponsor HallNihan Sultan Milat

13:20 CEST

Break Remo+Slack

13:39 CEST

EMEA-APAC Session 6 Meeting HallMartin Cech

13:40 CEST

Galaxy Community Update Meeting HallRoss Lazarus • Helena Rasche • Saskia Hiltemann • Andrew Lonie • Bjorn Gruning • Anton Nekrutenko • Jeremy Goecks • The Other Enis Afgan • Daniel Blankenberg • Mike Schatz

14:05 CEST

Modernizing the Galaxy Backend - Data Model Meeting HallThat Other Person

14:11 CEST

Modernizing the Galaxy Backend - Typing and the API Meeting HallDavid López

14:17 CEST

Modernizing the Galaxy Backend - Typing and Dependency Injection Meeting HallJohn Chilton

14:23 CEST

Modernizing the Galaxy Backend - A Task Framework Meeting HallDannon Baker

14:29 CEST

Galaxy for Protected Datasets Meeting HallThe Other Enis Afgan

14:35 CEST

Galaxy Language Server - Develop high-quality Galaxy tool wrappers at intergalactic speed Meeting HallDavid López

14:41 CEST

Galaxy CloudStor Integration - linking national resources for secure data transfer between services Meeting HallGareth Price

14:47 CEST

Q&A Meeting Hall

15:00 CEST

Break Remo+Slack

15:19 CEST

Americas Conference Day 2 Remo+Slack

15:20 CEST

Birds of a Feather (BOFs) Galactic Cafe BoF: Celestial Masses: Galaxy Platform for Mass Spectrometry Research Galactic CafePratik Jagtap • Melanie Föll BoF: Galaxy Public Health Community Galactic CafePeter van Heusden • Karin Lagesen • Arnold Knijn

16:45 CEST

Remo Reset Remo+Slack

17:00 CEST

Birds of a Feather (BOFs) Galactic Cafe BoF: Accessing NCBI Data in Galaxy Galactic CafeAdelaide Rhodes • Eric Cox • Nuala O'Leary BoF: At the edge of the Galaxy, the lonely life of a (small scale) local Galaxy server admin Galactic CafeHans-Rudolf Hotz • Lucille Delisle BoF: Boost the diversity in your community: Outreachy and other internship-mentorship initiatives Galactic CafeMatúš Kalas • Hager Eldakroury • Melissa

18:00 CEST

Americas Session 4 Meeting HallJeremy Goecks

18:01 CEST

Welcome Meeting HallJeremy Goecks

18:10 CEST

Detection and functional annotation of lncRNA Meeting HallBianca Pasat

18:16 CEST

Automated Deployment of Genome Databases for Marine Brown Algae Using Galaxy Genome Annotation (GGA) Meeting HallLoraine Guéguen

18:22 CEST

Galaxy-ML: An Accessible, Reproducible, and Scalable Machine Learning Toolkit for Biomedicine Meeting HallKaivan Kamali

18:40 CEST

The immuneML Portal: a public Galaxy server for machine learning analysis of adaptive immune receptor repertoires Meeting HallLonneke Scheffer

18:46 CEST

The Galaxy Public Health Community Meeting HallPeter van Heusden

18:52 CEST

A flexible Galaxy-based platform for the analysis of microbial WGS data in public health Meeting HallBert Bogaerts

18:58 CEST

The “ARIES Genomics” Italian public health surveillance system Meeting HallArnold Knijn

19:04 CEST

Fostering Public Health Bioinformatics and Collaboration with GalaxyTrakr Meeting HallJustin Payne

19:10 CEST

Q&A Meeting Hall

19:20 CEST

Break Remo+Slack

19:39 CEST

Americas Session 5 Meeting HallAnne Fouilloux

19:40 CEST

Analysis of Microscopy Data in Galaxy Meeting HallBeatriz Serrano-Solano

19:46 CEST

Bridging Natural Language Processing and Biomedical Data Analysis Meeting HallNancy Ide

20:04 CEST

French EBV operationalization pilot, where Galaxy can help Biodiversity Meeting HallColine Royaux

20:10 CEST

Updates from the Single-Cell Community Meeting HallMehmet Tekman • Wendi Bacon

20:16 CEST

NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy Meeting HallWillem de Koning

20:22 CEST

Using custom Galaxy workflows to reproducibly search for bacteriophage spanin proteins reveals distinct population distributions Meeting HallJolene Ramsey

20:28 CEST

Q&A Meeting Hall

20:40 CEST

Break Remo+Slack

20:45 CEST

Remo Reset Remo+Slack

20:59 CEST

Americas Wednesday Poster / Demo / Sponsor Session Poster / Demo / Sponsor Hall

21:00 CEST

F1000Research Poster / Demo / Sponsor HallDemitra Ellina W-3.10: Detection and functional annotation of lncRNA Poster / Demo / Sponsor HallBianca Pasat W-3.11: GalaxyLab: A JupyterLab extension for interactive graphical and programmatic access to Galaxy Poster / Demo / Sponsor Halljayadev joshi W-3.7: A flexible Galaxy-based platform for the analysis of microbial WGS data in public health Poster / Demo / Sponsor HallBert Bogaerts W-3.8: EDAM ontology, tools, and community Poster / Demo / Sponsor HallHager Eldakroury • Melissa W-3.9: Automated Deployment of Genome Databases for Marine Brown Algae Using Galaxy Genome Annotation (GGA) Poster / Demo / Sponsor HallLoraine Guéguen • Arthur Le Bars W-4.10: Using custom Galaxy workflows to reproducibly search for bacteriophage spanin proteins reveals distinct population distributions Poster / Demo / Sponsor HallJolene Ramsey W-4.11: The “ARIES Genomics” Italian public health surveillance system Poster / Demo / Sponsor HallArnold Knijn W-4.2: Driving workforce transition in Australian life science research Poster / Demo / Sponsor HallAnna Syme W-4.3: Galaxy and Research Lifecycle Management technologies for Earth Science Communities and Copernicus users in EOSC Poster / Demo / Sponsor HallAnne Fouilloux W-4.4: Publication of BioCompute Objects (IEEE-2791-2020) created from Galaxy workflow invocations Poster / Demo / Sponsor HallCharles [Hadley] King W-4.5: Gallantries: Scalable, Modular Bioinformatics Curricula Poster / Demo / Sponsor HallHelena Rasche W-4.7: The next-generation Galaxy community site Poster / Demo / Sponsor HallNick Stoler W-4.8: GPU enabled Jupyterlab notebook for deep learning using Tensorflow in Galaxy Poster / Demo / Sponsor HallAnup Kumar W-4.9: Taxonomic Classification Analysis of Human Gut Microbiota Using Kraken 2 Poster / Demo / Sponsor HallNihan Sultan Milat

22:20 CEST

Break Remo+Slack

22:39 CEST

Americas Session 6 Meeting HallBrad Langhorst

22:40 CEST

Galaxy Community Update Meeting HallRoss Lazarus • Helena Rasche • Saskia Hiltemann • Andrew Lonie • Bjorn Gruning • Anton Nekrutenko • Jeremy Goecks • The Other Enis Afgan • Daniel Blankenberg • Mike Schatz

23:05 CEST

Modernizing the Galaxy Backend - Data Model Meeting HallThat Other Person

23:11 CEST

Modernizing the Galaxy Backend - Typing and the API Meeting HallDavid López

23:17 CEST

Modernizing the Galaxy Backend - Typing and Dependency Injection Meeting HallJohn Chilton

23:23 CEST

Modernizing the Galaxy Backend - A Task Framework Meeting HallDannon Baker

23:29 CEST

Galaxy for Protected Datasets Meeting HallThe Other Enis Afgan

23:35 CEST

Galaxy Language Server - Develop high-quality Galaxy tool wrappers at intergalactic speed Meeting HallDavid López

23:41 CEST

Galaxy CloudStor Integration - linking national resources for secure data transfer between services Meeting HallGareth Price

23:47 CEST

Q&A Meeting Hall

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